mcp-gnomad
Provides tools for querying the gnomAD genomic database via its GraphQL API, enabling variant, gene, region, transcript, and search operations.
Click on "Install Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type
@followed by the MCP server name and your instructions, e.g., "@mcp-gnomadget frequency for variant rs123456"
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
mcp-gnomad
gnomAD MCP — Broad Institute Genome Aggregation Database (GraphQL).
Part of Pipeworx — an MCP gateway connecting AI agents to 673+ live data sources.
Tools
Tool | Description |
| Variant by chr-pos-ref-alt (e.g. "1-55051215-G-A") or rsid. |
| Gene info + variants. Accepts gene symbol (e.g. "BRCA1") or Ensembl gene id. |
| Variants in a genomic region (≤25kb recommended). |
| Transcript + variants. |
| Gene / variant search (autocomplete). |
Related MCP server: gnomAD MCP Server
Quick Start
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"gnomad": {
"url": "https://gateway.pipeworx.io/gnomad/mcp"
}
}
}Or connect to the full Pipeworx gateway for access to all 673+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}Using with ask_pipeworx
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Gnomad data" })The gateway picks the right tool and fills the arguments automatically.
More
License
MIT
This server cannot be installed
Maintenance
Resources
Unclaimed servers have limited discoverability.
Looking for Admin?
If you are the server author, to access and configure the admin panel.
Latest Blog Posts
- Who's Calling? MCP Hosts Are an Identity Blind Spot (And the Spec Knows It)By Om-Shree-0709 on .mcpAgent IdentityOAuth 2.1
- Your AI Chatbot Just Exposed Your CEO's Salary to an InternBy Om-Shree-0709 on .Agent IdentityMCP SecurityOAuth Delegation
- Why MCP Servers Need Execution Sandboxing (And Why Your Current Stack Isn't Enough)By Om-Shree-0709 on .Agentic AiPrompt InjectionWebAssembly
MCP directory API
We provide all the information about MCP servers via our MCP API.
curl -X GET 'https://glama.ai/api/mcp/v1/servers/pipeworx-io/mcp-gnomad'
If you have feedback or need assistance with the MCP directory API, please join our Discord server