Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||
Capabilities
Features and capabilities supported by this server
| Capability | Details |
|---|---|
| tools | {
"listChanged": true
} |
| prompts | {
"listChanged": false
} |
| resources | {
"subscribe": false,
"listChanged": false
} |
| experimental | {} |
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| get_gene_info | [gnomAD API] Retrieve gene information (v4 only) Args: gene_id (str, optional): Ensembl gene ID (e.g. ENSG00000139618) gene_symbol (str, optional): Gene symbol (e.g. PCSK9) Returns: dict: gene info Note: Not supported in v2/v3. Use search_for_genes instead. |
| search_for_genes | [gnomAD API] Search for genes (v2/v3/v4) Args: dataset (str): gnomAD dataset ID (gnomad_r3/gnomad_r2_1) reference_genome (str, optional): Reference genome (GRCh37 or GRCh38) query (str): Search string Returns: dict: search results |
| get_region_info | [gnomAD API] Retrieve region information (v4 only) Args: reference_genome (str): Reference genome (GRCh38) chrom (str): Chromosome start (int): Start position. Build must be GRCh38. stop (int): End position. Build must be GRCh38. Returns: dict: region info Note: Not supported in v2/v3. |
| get_variant_info | [gnomAD API] Retrieve variant information (v2/v3/v4) Args: dataset (str): gnomAD dataset ID (gnomad_r4/gnomad_r3/gnomad_r2_1) reference_genome (str): Reference genome (GRCh37 or GRCh38) variantId (str): Variant ID (e.g. 1-55051215-G-GA) Returns: dict: variant info |
| get_clinvar_variant_info | [gnomAD API] Retrieve ClinVar variant info (v2/v3/v4) Args: dataset (str): gnomAD dataset ID (gnomad_r4/gnomad_r3/gnomad_r2_1) reference_genome (str): Reference genome (GRCh37 or GRCh38) variant_id (str): Variant ID Returns: dict: ClinVar info |
| get_mitochondrial_variant_info | [gnomAD API] Retrieve mitochondrial variant info (v4 only) Args: reference_genome (str): Reference genome (GRCh37 or GRCh38) variant_id (str): Mitochondrial variant ID (e.g. M-8602-T-C). Build must be GRCh38. Returns: dict: mito variant info Note: Not supported in v2/v3. |
| get_structural_variant_info | [gnomAD API] Retrieve structural variant info (v2/v4) Args: dataset (str): SV dataset ID (gnomad_sv_r4/gnomad_sv_r2_1) reference_genome (str): Reference genome (GRCh37 or GRCh38) variantId (str): Structural variant ID Returns: dict: SV info |
| get_copy_number_variant_info | [gnomAD API] Retrieve copy number variant info (v4 only) Args: reference_genome (str): Reference genome (GRCh38) variantId (str): CNV ID (e.g. 18714__DUP) Returns: dict: CNV info Note: Not supported in v2/v3. |
| search_for_variants | [gnomAD API] Search for variants (v2/v3/v4) Args: dataset (str): gnomAD dataset ID (gnomad_r4/gnomad_r3/gnomad_r2_1) reference_genome (str): Reference genome (GRCh37 or GRCh38) query (str): Search string (variant_id) Returns: dict: search results (variant_id) |
| get_str_info | [gnomAD API] Retrieve STR info (v4 only) Args: reference_genome (str): Reference genome (GRCh38) id (str): STR ID (e.g. ATXN1) Returns: dict: STR info Note: Not supported in v2/v3. |
| get_variant_liftover | [gnomAD API] Retrieve liftover info (v2 only) Args: reference_genome (str): Reference genome (GRCh37 or GRCh38) source_variant_id (str, optional): Source variant ID (e.g. 12-112241766-G-A on GRCh37) liftover_variant_id (str, optional): Lifted over variant ID (e.g. 12-111803962-G-A on GRCh38) Returns: dict: liftover info Note: Not supported in v3/v4. |
| get_metadata | [gnomAD API] Retrieve metadata (v2/v3/v4) Args: dataset (str): gnomAD dataset ID (gnomad_r4/gnomad_r3/gnomad_r2_1) Returns: dict: metadata |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |