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koido

gnomAD MCP Server

by koido
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Python
Remote

Server Configuration

Describes the environment variables required to run the server.

NameRequiredDescriptionDefault

No arguments

Instructions

Guidance the server publishes about itself, which clients place ahead of the tool catalog so the model reads it before choosing anything.

This server publishes no instructions, or was last inspected before Glama recorded them.

Capabilities

Features and capabilities supported by this server

Protocol revision2025-11-25

CapabilityDetails
tools
{
  "listChanged": true
}
prompts
{
  "listChanged": false
}
resources
{
  "subscribe": false,
  "listChanged": false
}
experimental
{}

Tools

Functions exposed to the LLM to take actions

NameDescription
get_gene_infoB

[gnomAD API] Retrieve gene information (v4 only) Args: gene_id (str, optional): Ensembl gene ID (e.g. ENSG00000139618) gene_symbol (str, optional): Gene symbol (e.g. PCSK9) Returns: dict: gene info Note: Not supported in v2/v3. Use search_for_genes instead.

search_for_genesC

[gnomAD API] Search for genes (v2/v3/v4) Args: dataset (str): gnomAD dataset ID (gnomad_r3/gnomad_r2_1) reference_genome (str, optional): Reference genome (GRCh37 or GRCh38) query (str): Search string Returns: dict: search results

get_region_infoC

[gnomAD API] Retrieve region information (v4 only) Args: reference_genome (str): Reference genome (GRCh38) chrom (str): Chromosome start (int): Start position. Build must be GRCh38. stop (int): End position. Build must be GRCh38. Returns: dict: region info Note: Not supported in v2/v3.

get_variant_infoC

[gnomAD API] Retrieve variant information (v2/v3/v4) Args: dataset (str): gnomAD dataset ID (gnomad_r4/gnomad_r3/gnomad_r2_1) reference_genome (str): Reference genome (GRCh37 or GRCh38) variantId (str): Variant ID (e.g. 1-55051215-G-GA) Returns: dict: variant info

get_clinvar_variant_infoB

[gnomAD API] Retrieve ClinVar variant info (v2/v3/v4) Args: dataset (str): gnomAD dataset ID (gnomad_r4/gnomad_r3/gnomad_r2_1) reference_genome (str): Reference genome (GRCh37 or GRCh38) variant_id (str): Variant ID Returns: dict: ClinVar info

get_mitochondrial_variant_infoA

[gnomAD API] Retrieve mitochondrial variant info (v4 only) Args: reference_genome (str): Reference genome (GRCh37 or GRCh38) variant_id (str): Mitochondrial variant ID (e.g. M-8602-T-C). Build must be GRCh38. Returns: dict: mito variant info Note: Not supported in v2/v3.

get_structural_variant_infoC

[gnomAD API] Retrieve structural variant info (v2/v4) Args: dataset (str): SV dataset ID (gnomad_sv_r4/gnomad_sv_r2_1) reference_genome (str): Reference genome (GRCh37 or GRCh38) variantId (str): Structural variant ID Returns: dict: SV info

get_copy_number_variant_infoB

[gnomAD API] Retrieve copy number variant info (v4 only) Args: reference_genome (str): Reference genome (GRCh38) variantId (str): CNV ID (e.g. 18714__DUP) Returns: dict: CNV info Note: Not supported in v2/v3.

search_for_variantsB

[gnomAD API] Search for variants (v2/v3/v4) Args: dataset (str): gnomAD dataset ID (gnomad_r4/gnomad_r3/gnomad_r2_1) reference_genome (str): Reference genome (GRCh37 or GRCh38) query (str): Search string (variant_id) Returns: dict: search results (variant_id)

get_str_infoB

[gnomAD API] Retrieve STR info (v4 only) Args: reference_genome (str): Reference genome (GRCh38) id (str): STR ID (e.g. ATXN1) Returns: dict: STR info Note: Not supported in v2/v3.

get_variant_liftoverB

[gnomAD API] Retrieve liftover info (v2 only) Args: reference_genome (str): Reference genome (GRCh37 or GRCh38) source_variant_id (str, optional): Source variant ID (e.g. 12-112241766-G-A on GRCh37) liftover_variant_id (str, optional): Lifted over variant ID (e.g. 12-111803962-G-A on GRCh38) Returns: dict: liftover info Note: Not supported in v3/v4.

get_metadataC

[gnomAD API] Retrieve metadata (v2/v3/v4) Args: dataset (str): gnomAD dataset ID (gnomad_r4/gnomad_r3/gnomad_r2_1) Returns: dict: metadata

Prompts

Interactive templates invoked by user choice

NameDescription

No prompts

Resources

Contextual data attached and managed by the client

NameDescription

No resources

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