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get_metadata

Retrieve metadata from gnomAD genomic datasets to understand dataset structure, version details, and available fields for analysis.

Instructions

[gnomAD API] Retrieve metadata (v2/v3/v4) Args: dataset (str): gnomAD dataset ID (gnomad_r4/gnomad_r3/gnomad_r2_1) Returns: dict: metadata

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
datasetYes
reference_genomeYes

Implementation Reference

  • The handler function `get_metadata` is defined in `server.py` and registered as an MCP tool using `@mcp.tool()`. It takes dataset and reference genome as arguments and returns the result of `run_query_with_metadata`.
    def get_metadata(
        dataset: str,
        reference_genome: str
    ) -> dict:
        """
        [gnomAD API] Retrieve metadata (v2/v3/v4)
        Args:
            dataset (str): gnomAD dataset ID (gnomad_r4/gnomad_r3/gnomad_r2_1)
        Returns:
            dict: metadata
        """
        variables = {
            'dataset': dataset,
            'reference_genome': reference_genome,
        }
        return run_query_with_metadata('meta', variables)

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