load_data
Load spatial transcriptomics data into a SpatialDataset with cell/gene counts and metadata profiles. Supports Visium, Xenium, Slide-seq, MERFISH, seqFISH, and generic formats.
Instructions
Load spatial transcriptomics data with comprehensive metadata profile.
Args:
data_path: Path to data file or directory
data_type: 'visium', 'xenium', 'slide_seq', 'merfish', 'seqfish', or 'generic'
name: Optional dataset name
Returns:
SpatialDataset with cell/gene counts and metadata profilesInput Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| data_path | Yes | ||
| data_type | Yes | ||
| name | No |
Output Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| id | Yes | ||
| name | Yes | ||
| data_type | Yes | ||
| description | No | ||
| n_cells | No | ||
| n_genes | No | ||
| spatial_coordinates_available | No | ||
| tissue_image_available | No | ||
| obs_columns | No | ||
| var_columns | No | ||
| obsm_keys | No | ||
| uns_keys | No | ||
| top_highly_variable_genes | No | ||
| top_expressed_genes | No |