compute_embeddings
Reduce dimensionality and cluster spatial transcriptomics data by computing PCA, UMAP, neighbor graphs, and Leiden clustering with configurable parameters.
Instructions
Compute dimensionality reduction (PCA, UMAP), clustering, and neighbor graphs.
Args:
data_id: Dataset ID
params: Embedding parameters (PCA, UMAP, clustering, etc.)
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| params | No | ||
| data_id | Yes |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||