compute_embeddings
Compute PCA and UMAP dimensionality reduction, Leiden/Louvain clustering, and neighbor graphs for spatial transcriptomics data analysis.
Instructions
Compute dimensionality reduction (PCA, UMAP), clustering, and neighbor graphs.
Args:
data_id: Dataset ID
params: Embedding parameters (PCA, UMAP, clustering, etc.)Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| data_id | Yes | ||
| params | No |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||