Args:
    data_path: Path to data file or directory
    data_type: 'visium', 'xenium', 'slide_seq', 'merfish', 'seqfish', or 'generic'
    name: Optional dataset name

Returns:
    SpatialDataset with cell/gene counts and metadata profiles

This tool does not compute PCA, UMAP, clustering, or neighbor graphs. Run
compute_embeddings() afterward when downstream tools require those artifacts.

Args:
    data_id: Dataset ID
    params: Preprocessing parameters (all have sensible defaults)

Args:
    data_id: Dataset ID
    params: Embedding parameters (PCA, UMAP, clustering, etc.)

Args:
    data_id: Dataset ID
    params: Visualization parameters (plot_type, subtype, genes, output_format, dpi, etc.)

Args:
    data_id: Dataset ID
    params: Annotation parameters (method, reference_data_id, cell_type_key, etc.)

Note: Reference methods (tangram, scanvi) require reference_data_id to be preprocessed first.

Args:
    data_id: Dataset ID
    params: Analysis parameters (analysis_type, cluster_key, genes). See SpatialStatisticsParameters for all types.

Args:
    data_id: Dataset ID
    params: Required - group_key and optional method, group1/group2, n_top_genes, etc.

Args:
    data_id: Dataset ID
    params: Required - condition_key, condition1, condition2, sample_key, etc.

Args:
    data_id: Dataset identifier
    params: Required - reference_key, reference_categories, and optional method/thresholds.

Args:
    data_id: Dataset ID
    params: Velocity parameters (method, scvelo_mode, etc.)

Args:
    data_id: Dataset ID
    params: Trajectory parameters (method, root_cell, spatial_weight, etc.)

Args:
    data_ids: List of dataset IDs to integrate
    params: Integration parameters (method, batch_key, n_pcs, etc.)

Args:
    data_id: Dataset ID
    params: Required - method, cell_type_key, reference_data_id. See DeconvolutionParameters for all methods and options.

Args:
    data_id: Dataset ID
    params: Spatial domain parameters (method, n_domains, resolution, etc.)

Args:
    data_id: Dataset ID
    params: Required - species, cell_type_key, and method. For mouse with liana, set liana_resource='mouseconsensus'.

Args:
    data_id: Dataset ID
    params: Required - species must be specified. See EnrichmentParameters for methods and gene_set_database options.

Args:
    data_id: Dataset ID
    params: Spatial variable gene parameters (method, n_top_genes, etc.)

Args:
    source_id: Source dataset ID
    target_id: Target dataset ID to align to
    params: Registration parameters (method, alignment settings, etc.)

Returns:
    Registration result with method, dataset IDs, spot counts, and registered spatial key

Args:
    data_id: Dataset ID to export
    path: Custom path (default: ~/.chatspatial/active/{data_id}.h5ad)

Returns:
    Absolute path where data was exported

Args:
    data_id: Dataset ID to reload (must exist in MCP memory)
    path: Custom path (default: ~/.chatspatial/active/{data_id}.h5ad)

Returns:
    Summary of reloaded dataset