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analyze_spatial_statistics

Idempotent

Analyze spatial autocorrelation and enrichment patterns in transcriptomics data using Moran's I, Geary's C, Getis-Ord, and neighborhood statistics.

Instructions

Analyze spatial statistics and autocorrelation patterns.

Args:
    data_id: Dataset ID
    params: Analysis parameters (analysis_type, cluster_key, genes). See SpatialStatisticsParameters for all types.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
paramsNo
data_idYes

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
data_idYes
statisticsNo
results_keyNo
top_featuresNo
analysis_typeYes
n_significantNo
summary_metricsNo
n_features_analyzedNo
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations indicate idempotentHint=true and readOnlyHint=false. The description adds no extra behavioral details about side effects, authentication, or rate limits. It does not contradict annotations, but also does not enhance beyond them.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise: three sentences packed with purpose and parameter guidance. Every word adds value, and the structure is front-loaded with the main action.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the complexity of spatial statistics and the presence of an output schema, the description is adequate but lacks details on what results are returned or how they are stored. It does not leverage the output schema's existence to provide a summary.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0% for top-level parameters, but the description explains 'data_id: Dataset ID' and 'params: Analysis parameters (analysis_type, cluster_key, genes). See SpatialStatisticsParameters for all types.' This adds meaningful context that the schema lacks.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb 'analyze' and resource 'spatial statistics and autocorrelation patterns', clearly distinguishing it from sibling tools like analyze_cell_communication, analyze_enrichment, etc.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description states what the tool does but provides no guidance on when to use it versus alternatives, nor any exclusions or prerequisites. Usage is implied but not explicit.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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