Skip to main content
Glama

Related Servers

Alternatives to ChatSpatial

No user-submitted related servers found.

    Related Servers

    • A
      license
      Not graded
      quality
      C
      maintenance
      An MCP server that enables scRNA-Seq analysis through natural language, providing tools for data preprocessing, clustering, and biological visualization. It supports both predefined function execution and a flexible code mode powered by a Jupyter backend for automated single-cell transcriptomics workflows.
      16
      BSD 3-Clause
    • F
      license
      Not graded
      quality
      C
      maintenance
      Provides a natural language interface for single-cell RNA-Seq analysis using the decoupleR framework. It enables users to perform biological pathway inference, data clustering, and visualization through MCP-compatible AI clients.
      4
      -
    • A
      license
      C
      quality
      C
      maintenance
      An MCP server that enables single-cell RNA sequencing analysis through natural language, supporting data processing, visualization, and analysis tasks without requiring coding knowledge.
      52
      12
      BSD 3-Clause
    • F
      license
      Not graded
      quality
      C
      maintenance
      Enables natural language interaction for scRNA-Seq analysis including preprocessing, clustering, and visualization using the CellRank library. It allows users and agents to perform complex genomic data tasks through standard MCP clients and frameworks.
      2
      -
    • F
      license
      Not graded
      quality
      C
      maintenance
      Enables natural language interface for single-cell RNA-Seq analysis using Liana. Supports reading/writing scRNA-Seq data, cell-cell communication analysis, and visualization through circle plots and dotplots.
      1
      -

    TDQS

    B3.2/5.0

    Scored across 20 tools

    Disambiguation4/5

    Tools map to distinct analytical tasks such as loading, preprocessing, embedding, annotation, and downstream analyses, with descriptions that clarify each tool's role. However, 'find_markers' and 'compare_conditions' both involve differential expression and could be confused, and 'analyze_spatial_statistics' overlaps somewhat with 'find_spatial_genes'.

    Naming Consistency5/5

    Nearly all tools follow a consistent verb_noun pattern like load_data, visualize_data, and analyze_enrichment. The naming is predictable and uniform, making tool selection straightforward.

    Tool Count3/5

    20 tools is on the heavy side and sits in the 16-25 range that feels bloated for a typical MCP server. Each tool does appear to serve a distinct stage in the spatial transcriptomics workflow, but the overall surface is large.

    Completeness4/5

    The set covers the full analysis lifecycle from data loading, preprocessing, embedding, annotation, and a wide range of downstream analyses through export/reload. Minor gaps include no list/delete data management tools and no explicit metadata retrieval tool after loading, but these are workable.

    Maintenance

    ActivityMaintained
    ResponsivenessResponsive