find_spatial_genes
Identify genes with spatial expression patterns in spatial transcriptomics data, selecting from methods like FlashS, SPARKX, or SpatialDE with adjustable parameters.
Instructions
Identify spatially variable genes.
Args:
data_id: Dataset ID
params: Spatial variable gene parameters (method, n_top_genes, etc.)
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| params | No | ||
| data_id | Yes |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| method | Yes | ||
| data_id | Yes | ||
| p_values | No | ||
| q_values | No | ||
| results_key | Yes | ||
| spatial_genes | Yes | ||
| flashs_results | No | ||
| sparkx_results | No | ||
| gene_statistics | No | ||
| n_genes_analyzed | Yes | ||
| spatialde_results | No | ||
| n_significant_genes | Yes |