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Search PubMed

search_pubmed
Read-onlyIdempotent

Query PubMed using advanced NCBI syntax to retrieve scientific articles with full metadata. Results are indexed into a session knowledge graph for integrated analysis.

Instructions

Search PubMed for scientific literature. Supports full NCBI query syntax (MeSH terms, Boolean operators, field tags, date ranges). Returns articles with title, authors, abstract, DOI, PMID, journal, year, and MeSH terms. Results auto-indexed into session knowledge graph.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
queryYesPubMed query. E.g. 'BRCA1[Gene] AND breast cancer AND Review[pt]'
max_resultsNoArticles to return Default 10.
sortNoSort order.relevance
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare read-only, idempotent, open-world. The description adds that results are auto-indexed into the session knowledge graph and lists return fields. No contradiction; adds useful behavioral context.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Three concise sentences that front-load the primary purpose, then add capabilities and return info. No fluff; every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a read-only search tool with no output schema, the description covers purpose, features, return fields, and a side effect. It does not mention pagination or limits, but is otherwise complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% with detailed parameter descriptions. The description does not add additional meaning beyond what the schema provides, thus baseline score of 3.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool searches PubMed for scientific literature, specifies it supports full NCBI query syntax, and lists return fields. It distinguishes from sibling tools like search_clinical_trials by being specifically for PubMed literature.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for literature searches and mentions advanced query features, but does not explicitly compare to sibling tools or provide when-to-use guidance. The context is clear though not exclusive.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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