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Multi Omics Gene Report

multi_omics_gene_report
Read-only

Integrates 7 biomedical databases to generate a comprehensive multi-omics report for any gene. Get a complete overview from genomics to clinical trials in one call.

Instructions

FLAGSHIP: 7-database parallel integration — NCBI Gene, PubMed, Reactome, ChEMBL, Open Targets, GEO, ClinicalTrials.gov. One call, complete overview.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
gene_symbolYesHGNC gene symbol (e.g. 'EGFR', 'TP53', 'BRCA1', 'KRAS').
detail_levelNoResponse size budget. Use 'compact' for connector-friendly summaries, 'standard' for the default layer payloads, and 'full' to preserve full layer outputs.compact
include_synthesisNoWhen true, add a Claude-written synthesis if ANTHROPIC_API_KEY is configured.
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already provide readOnlyHint=true and destructiveHint=false. The description adds value by listing the specific databases integrated and stating the tool produces a 'complete overview', which augments the behavioral context beyond the annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences with zero waste. The 'FLAGSHIP' label front-loads importance, and every word serves a purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's complexity (7 databases, 3 parameters, no output schema), the description adequately explains scope and intent. Though it does not detail the report's structure, the integration of databases is sufficient for agent selection.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, so parameters are already well-documented. The description does not add additional parameter-level meaning beyond what the schema provides, meeting the baseline.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose as a 'FLAGSHIP' that integrates 7 databases (NCBIGene, PubMed, etc.) for a complete gene overview. It distinguishes itself from sibling tools by emphasizing parallel multi-database integration.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies use when a comprehensive multi-database gene report is needed via the 'FLAGSHIP' label and database list, but does not explicitly state when to use or avoid this tool versus alternatives like get_gene_info or search_pubmed.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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