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Genome Browser Snapshot

genome_browser_snapshot
Read-onlyIdempotent

Generate genome-browser links and locus context for a gene or genomic interval. Specify a gene symbol or region, optional flanking base pairs, and assembly.

Instructions

Generate genome-browser links and locus context for a gene or explicit genomic interval.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
gene_symbolNoGene symbol to resolve to a locus.
regionNoExplicit region such as 'chr17:43044295-43170245'.
flank_bpNoFlanking sequence to include around the locus. Default 25000.
assemblyNoGenome assembly.GRCh38
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true, destructiveHint=false, idempotentHint=true, covering safety. The description adds value by specifying the generated output (links and context), providing behavioral context beyond what annotations offer.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, well-structured sentence with no extraneous words. It efficiently communicates the tool's purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the low complexity, clear description, complete schema, and detailed annotations, the description is mostly complete. However, the term 'locus context' could be interpreted as ambiguous, and there is no mention of return format or that it generates URLs.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema has 100% description coverage so baseline is 3. The description adds context that the tool works for a gene or genomic interval, tying the parameters together, which is helpful beyond the per-parameter descriptions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'generate' and the resources 'genome-browser links and locus context', and it distinguishes from sibling tools by specifying the output type (links and context) rather than analysis or other operations.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No explicit when-to-use or when-not-to-use guidance is provided. The usage context is implied by the description but not compared to alternatives, which limits the agent's ability to decide when to use this tool over siblings.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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