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Lucas-Servi

kegg-mcp-server

by Lucas-Servi

search_brite

Read-onlyIdempotent

Query KEGG BRITE functional hierarchies by name to retrieve biological classifications for pathways, transporters, or ribosomes.

Instructions

Search KEGG BRITE functional hierarchy databases.

Args: query: Hierarchy name (e.g. 'KEGG pathway', 'transporter', 'ribosome'). max_results: Maximum number of results to return (capped at 100).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
queryYes
max_resultsNo

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations indicate a safe read-only, idempotent operation. The description adds the cap on max_results (100) but does not disclose further behavioral traits like pagination or result format.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise: two sentences plus parameter list. It front-loads the purpose and uses minimal, effective language.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple search tool with existing output schema, the description covers the key inputs and constraints. It is nearly complete, though missing error handling details.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema coverage, the description provides useful semantics: query is a hierarchy name with examples, and max_results has a cap. This adds meaning beyond the schema titles.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'Search' and the resource 'KEGG BRITE functional hierarchy databases'. This distinguishes it from siblings like search_pathways and search_compounds.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains the parameters (query and max_results) but does not provide guidance on when to use this tool versus alternatives like get_brite_info or search_pathways.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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