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Lucas-Servi

kegg-mcp-server

by Lucas-Servi

get_pathway_info

Read-onlyIdempotent

Retrieve detailed information for a KEGG pathway by specifying its pathway ID, with options for summary or full detail level including linked genes, compounds, and reactions.

Instructions

Get detailed information for a KEGG pathway.

Args: pathway_id: KEGG pathway ID (e.g. 'hsa00010', 'map00010'). detail_level: 'summary' (default, compact) or 'full' (complete flat-file parse with all linked genes, compounds, reactions, references, and xrefs).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
pathway_idYes
detail_levelNosummary

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true, idempotentHint=true, and destructiveHint=false. The description adds the detail_level parameter behavior, which provides context beyond annotations but does not reveal any additional behavioral traits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise, with a clear purpose statement and well-structured parameter explanations. Every sentence adds value, and no redundant information is present.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema and annotations covering safety and idempotency, the description adequately covers the tool's behavior. However, it could mention the relationship to sibling tools or typical usage scenarios for completeness.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema has 0% description coverage (no parameter descriptions in schema), but the tool's description explains both parameters clearly, including examples for pathway_id and the distinction between summary and full detail levels. This adds significant meaning beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states 'Get detailed information for a KEGG pathway', using a specific verb and resource. It is clear but does not explicitly differentiate from sibling tools like get_pathway_genes or get_pathway_compounds.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is provided on when to use this tool versus alternatives such as get_pathway_genes or render_pathway_ascii. The description lacks recommendations or exclusion criteria.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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