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kegg-mcp-server

by Lucas-Servi

get_ko_info

Read-onlyIdempotent

Retrieve detailed information about a specific KEGG Orthology entry by providing its KO identifier. Choose summary or full detail level to suit your needs.

Instructions

Get detailed information for a KEGG Orthology (KO) entry.

Args: ko_id: KEGG KO identifier (e.g. 'K00844' for hexokinase). detail_level: 'summary' (default, compact) or 'full' (complete flat-file parse).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
ko_idYes
detail_levelNosummary

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint, idempotentHint, and destructiveHint. The description adds detail level options but no additional behavioral context such as rate limits or authentication requirements.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise: one line for purpose followed by argument details. It is well-structured and front-loaded with no superfluous content.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the output schema exists, description need not explain return format. It covers both parameters and suffices for a simple retrieval tool, though mentioning when to use it (e.g., 'when you have a KO ID') would enhance completeness.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema coverage, the description compensates by explaining both parameters: ko_id with an example and detail_level with enum values and default. This adds significant meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'get' and resource 'KEGG Orthology (KO) entry', distinguishing it from sibling 'search_ko_entries' which implies searching rather than retrieving by ID.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides parameter details but does not explicitly state when to use this tool versus alternatives like search_ko_entries or other get_* tools. Usage is implied by the need for a KO ID but no exclusions are given.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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