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Lucas-Servi

kegg-mcp-server

by Lucas-Servi

get_gene_orthologs

Read-onlyIdempotent

Retrieve KEGG Orthology entries and cross-organism orthologs for a specified gene. Input a KEGG gene ID to get functional orthologs across species.

Instructions

Get KO (KEGG Orthology) entries and cross-organism orthologs for a gene.

Args: gene_id: KEGG gene ID (e.g. 'hsa:1956').

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
gene_idYes

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true, idempotentHint=true, destructiveHint=false, covering safety. Description adds minimal behavioral context (returns orthologs). No contradiction with annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Extremely concise, front-loaded with purpose. No wasted language. Every sentence is informative.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given one parameter, annotations, and an output schema (exists), the description is complete enough. Minor gap: no mention of pagination or result limits, but acceptable for a simple lookup tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description fully documents the single parameter with format and example ('hsa:1956'). Adds significant meaning beyond schema's type/title.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the tool retrieves KO entries and cross-organism orthologs for a gene, with a specific verb and resource. Example provided aids understanding. Distinguishes from siblings like get_gene_info or get_ko_info.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives, nor any exclusions or prerequisites. A brief mention of when to use another tool (e.g., for general gene info) would improve this.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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