kegg-mcp-server
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TDQS
Scored across 34 tools
Most tools are clearly distinct by KEGG entity type, with a consistent search/get pattern. A few generic utilities like find_related_entries overlap with specialized functions (e.g., get_gene_orthologs, get_compound_reactions), but descriptions clarify their specific use cases.
Tool names follow a consistent verb_noun snake_case pattern, such as search_* and get_*_info. Minor deviations like list_organisms, batch_entry_lookup, and render_pathway_ascii are still intuitive and do not break the overall coherence.
With 34 tools, the server exceeds the 25-tool threshold for 'too many' per the rubric. While each tool serves a distinct function, the high number may overwhelm agents, making the tool set harder to navigate.
The tool set comprehensively covers all major KEGG databases (compounds, drugs, diseases, genes, enzymes, glycans, modules, orthology, pathways, reactions, BRITE, organisms) with search and detail retrieval, plus batch and conversion utilities. No significant gaps are apparent for a read-only KEGG server.