samtools_mcp

# Use official samtools base image FROM --platform=linux/arm64 staphb/samtools:1.18 # Set working directory WORKDIR /app # Install Python and pip USER root RUN apt-get update && apt-get install -y \ python3 \ python3-pip \ && rm -rf /var/lib/apt/lists/* # Copy only the necessary files COPY pyproject.toml ./ COPY samtools_mcp.py ./ COPY main.py ./ # Install Python dependencies RUN pip3 install --no-cache-dir typer pydantic # Create a non-root user RUN useradd -m -s /bin/bash mcp_user && \ chown -R mcp_user:mcp_user /app # Switch to non-root user USER mcp_user # Set environment variables ENV PYTHONPATH=/app # Command to run the MCP CMD ["python3", "main.py"]