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BioMCP

by genomoncology
GitHub
Python
MIT License
230
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  • Linux
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article_getter

Retrieve article details such as title, abstract, full text, and source using PubMed, PMC, or DOI identifiers. Access structured biomedical data via BioMCP for research and analysis purposes.

Instructions

Fetch detailed information for a specific article.

Retrieves the full abstract and available text for an article by its identifier. Supports: - PubMed IDs (PMID) for published articles - PMC IDs for articles in PubMed Central - DOIs for preprints from Europe PMC Returns formatted text including: - Title - Abstract - Full text (when available from PMC for published articles) - Source information (PubMed or Europe PMC)

Input Schema

NameRequiredDescriptionDefault
pmidYesArticle identifier - either a PubMed ID (e.g., '38768446' or 'PMC11193658') or DOI (e.g., '10.1101/2024.01.20.23288905')

Input Schema (JSON Schema)

{ "properties": { "pmid": { "description": "Article identifier - either a PubMed ID (e.g., '38768446' or 'PMC11193658') or DOI (e.g., '10.1101/2024.01.20.23288905')", "title": "Pmid", "type": "string" } }, "required": [ "pmid" ], "title": "article_getterArguments", "type": "object" }
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