TogoMCP

# Endpoint: https://rdfportal.org/primary/sparql # Description: SPARQL description. PREFIX orth: <http://purl.org/net/orth#> PREFIX mbgd: <http://purl.jp/bio/11/mbgd#> PREFIX faldo: <http://biohackathon.org/resource/faldo#> PREFIX void: <http://rdfs.org/ns/void#> SELECT ?Cluster ?gene ?dataset ?nucseq ?organism FROM <http://mbgd.genome.ad.jp/rdf/resource/default> FROM <http://mbgd.genome.ad.jp/rdf/resource/gene> FROM <http://mbgd.genome.ad.jp/rdf/resource/organism> FROM <http://mbgd.genome.ad.jp/rdf/resource/nucseq> FROM <http://mbgd.genome.ad.jp/rdf/resource/xref_uniprot> FROM <http://purl.jp/bio/11/orth> FROM <http://purl.jp/bio/11/mbgd> WHERE { VALUES ?gene__class { orth:Gene mbgd:CDS } VALUES ?dataset__class { void:Dataset orth:OrthologyDataset } VALUES ?nucseq__class { mbgd:Chromosome mbgd:Circular } VALUES ?organism__class { mbgd:Genome mbgd:CompleteGenome } ?Cluster a orth:OrthologsCluster ; orth:hasHomologous / mbgd:gene ?gene ; void:inDataset ?dataset . ?dataset a ?dataset__class . ?gene a ?gene__class ; mbgd:nucSeq ?nucseq ; mbgd:organism ?organism . ?nucseq a ?nucseq__class . ?organism a ?organism__class . } LIMIT 100