TogoMCP

# Endpoint: https://rdfportal.org/primary/sparql # Description: Obrain gene records from the HGNC data PREFIX obo: <http://purl.obolibrary.org/obo/> PREFIX m2r: <http://med2rdf.org/ontology/med2rdf#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX dct: <http://purl.org/dc/terms/> PREFIX idt: <http://identifiers.org/> SELECT ?gene_id ?hgnc_id ?description ?location ?ncbigene_id ?ensembl_id ?uniprot_id ?pubmed_id FROM <http://rdfportal.org/dataset/hgnc> WHERE { VALUES ?HGNC__class { obo:SO_0000704 m2r:Gene } ?HGNC a ?HGNC__class ; rdfs:label ?gene_id ; dct:identifier ?hgnc_id ; dct:description ?description . OPTIONAL { ?HGNC obo:so_part_of ?location . } OPTIONAL { ?HGNC rdfs:seeAlso ?NCBIGene . ?NCBIGene a idt:ncbigene ; dct:identifier ?ncbigene_id . } OPTIONAL { ?HGNC rdfs:seeAlso ?Ensembl . ?Ensembl a idt:ensembl ; dct:identifier ?ensembl_id . } OPTIONAL { ?HGNC rdfs:seeAlso ?UniProt . ?UniProt a idt:uniprot ; dct:identifier ?uniprot_id . } OPTIONAL { ?HGNC dct:references / dct:identifier ?pubmed_id . } } LIMIT 100