"How to execute custom code in a Linux Docker container" matching MCP servers:

Enables users to search and fetch PubMed biomedical literature articles through natural language queries in Microsoft 365 Copilot.

Enables AI agents to rank US healthcare organizations for clinical trial site feasibility, predicting patient accrual for a Graves' disease protocol using claims and registry data.

Enables natural-language querying of a mock legacy healthcare database and returns validated FHIR resources (Patient, Observation, Condition).

Enables LLM agents to query de-identified FHIR-shaped hospital data through audited, read-only tools for patients, encounters, conditions, observations, medications, and interaction checks, while any medication write stays a draft that a clinician must confirm out-of-band.

Enables AI assistants to read COVID-19 lateral flow test results from photographs by calling a deployed computer-vision pipeline, returning verdicts like positive or negative with confidence.

MyChart MCP Server

Enables genomic sequence analysis through the Evo 2 model, supporting DNA sequence scoring, embedding, generation, and variant effect prediction with multiple model checkpoints (7B, 40B, 1B parameters).

Enables variant annotation and effect prediction using the Ensembl VEP API, with support for batch and single queries.

An open source biomedical research agent that provides LLMs with 28 tools for drug discovery, protein analysis, literature search, medical imaging, omics, and sandbox execution, all running locally via Ollama and MedGemma.

Exposes vaccination-appointment scheduling as standardized MCP tools backed by an in-memory mock backend. Enables agents to list available slots by date and vaccine type, book appointments, check confirmation status, and cancel bookings.

Explains why two scientific papers disagree. A contradiction explorer for bench scientists that compares two studies' designs and grounds every claim in a verbatim quote from the source text.

An MCP server that grounds protein research in the UniProt SPARQL endpoint, providing tools for querying proteins, sequences, variants, diseases, and more via intent-named tools and raw SPARQL.

Grounds gene-nomenclature work in the HUGO Gene Nomenclature Committee (HGNC) dataset, enabling resolution of gene symbols and IDs to canonical HGNC identifiers, plus cross-references and batch operations.

An MCP server implementing the ROBINS-I V2 framework for risk-of-bias assessment in non-randomized studies, with deterministic algorithms and full provenance. It enables users to parse study documents, specify target trial results, answer signalling questions with evidence-bound quotes, and compute or override domain judgements.

Verified ICD-10-CM code lookup & validation for AI agents — official descriptions, not guesses.

TransBench is a translational research agent that takes free-text clinical observations, decomposes them into biological axes, generates falsifiable hypotheses grounded in PubMed evidence, and designs reproducible computational experiments with concrete datasets for Claude Science.

MCP server that reads glucose data from a FreeStyle sensor via the LibreLinkUp API, providing current glucose and history with explicit coverage and gaps.

Monitors PubMed and medRxiv for configurable research topics, summarizes papers using a local LLM, and stores deduplicated results in a local database.

Enables natural language querying of brain volumes (NIfTI) with a fixed set of tools, returning visualizations and reproducible nilearn code.

Enables Claude Desktop to query and analyze diabetes data from Omnipod 5 and Glooko through natural language, providing clinical audit and triage insights such as time in range, trends, and bolus analysis.