A
licenseA
qualityD
maintenanceEnables LLM-based agents to interact with FHIR healthcare data through natural language prompts, providing full CRUD operations on FHIR resources, document processing, and semantic search capabilities.
13
97
MIT
JondaX MCP Server
OfficialClick on "Install Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type
@followed by the MCP server name and your instructions, e.g., "@JondaX MCP ServerUpload this pathology report PDF and extract the results as FHIR JSON."
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
JondaX Model Context Protocol (MCP) Server
Official Model Context Protocol (MCP) server for JondaX by Jonda Health. Connect AI assistants (Antigravity, Claude Desktop, Cursor, Zed, Cline) directly to the JondaX Health Data Transformation Engine.
JondaX extracts data from clinical files — PDFs, images, HL7, FHIR — normalises it, and returns clean, structured, coded output in the format your system needs.
Capabilities & MCP Tools
JondaX provides two core processing modules and retrieval tools:
Tool Name | Type | Description |
| Async | Uploads a pathology report or lab document (PDF, JPG, PNG, JSON, CSV, Parquet and etc). JondaX de-identifies, extracts, normalises, translates, and returns an |
| Sync | Uploads an image of a medical device reading (pulse oximeter, blood pressure monitor, glucometer, etc.) and extracts readings instantly. |
| Query | Checks processing status ( |
| Query | Retrieves structured extracted results (JSON, FHIR JSON, FHIR XML, HL7, CSV, Parquet). Retained for 30 days. Returns HTTP 202 if still in progress. |
Related MCP server: DICOM MCP Server
Configuration
Get your API key from the Integration section in the JondaX Client Portal. https://app.jondax.eu
Environment Variable | Required | Default | Description |
| Yes | — | Your JondaX API token ( |
| No |
| JondaX API Base URL |
Quickstart Setup in AI Tools
1. In Claude Desktop (claude_desktop_config.json)
{
"mcpServers": {
"jondax": {
"command": "npx",
"args": ["-y", "@jondax/mcp-server"],
"env": {
"JONDAX_API_KEY": "YOUR_JONDAX_API_KEY",
"JONDAX_BASE_URL": "https://app.jondax.eu"
}
}
}
}2. In Cursor / Antigravity (mcp_config.json)
{
"mcpServers": {
"jondax": {
"command": "npx",
"args": ["-y", "@jondax/mcp-server"],
"env": {
"JONDAX_API_KEY": "YOUR_JONDAX_API_KEY",
"JONDAX_BASE_URL": "https://app.jondax.eu"
}
}
}
}How It Works
┌──────────────┐ upload_pathology_scan ┌─────────────────────────────┐
│ ├───────────────────────────────►│ JondaX Transformation Engine│
│ AI Agent │ │ • De-identifies & Extracts │
│ (Antigravity │◄───────────────────────────────┤ • Maps Medical Terminology │
│ / Claude) │ Returns uploadId │ • Converts Units & Codes │
│ │ └──────────────┬──────────────┘
│ │ get_extracted_results │
│ ├───────────────────────────────────────────────┘
│ │◄───────────────────────────────
│ │ Returns Structured Results
└──────────────┘ (JSON, FHIR, HL7, CSV, etc.)Supported Output Formats & Standards
FHIR: FHIR JSON, FHIR XML (Observation, DiagnosticReport)
HL7: HL7 v2
Standard Data: JSON, CSV, Parquet
Terminology & Coding: LOINC, standard clinical units & normalized ranges
Compliance & Security
JondaX is built specifically for healthcare data:
HIPAA · GDPR · PDPA · ISO 27001
Local Development
If contributing or building from source:
git clone https://github.com/JondaHealthTech/jondax-mcp-server.git
cd jondax-mcp-server
npm install
npm run buildDocumentation & Links
API Docs: jondax.redocly.app
Product: jonda.health/product/jondax
Client Portal: app.jondax.eu
License
MIT © Jonda Health
Maintenance
–Maintainers
–Response time
–Release cycle
–Releases (12mo)
Commit activity
Resources
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