"Executing code in a sandbox environment" matching MCP servers:

An open source biomedical research agent that provides LLMs with 28 tools for drug discovery, protein analysis, literature search, medical imaging, omics, and sandbox execution, all running locally via Ollama and MedGemma.

Enables genomic sequence analysis through the Evo 2 model, supporting DNA sequence scoring, embedding, generation, and variant effect prediction with multiple model checkpoints (7B, 40B, 1B parameters).

Enables variant annotation and effect prediction using the Ensembl VEP API, with support for batch and single queries.

Exposes vaccination-appointment scheduling as standardized MCP tools backed by an in-memory mock backend. Enables agents to list available slots by date and vaccine type, book appointments, check confirmation status, and cancel bookings.

Explains why two scientific papers disagree. A contradiction explorer for bench scientists that compares two studies' designs and grounds every claim in a verbatim quote from the source text.

An MCP server that grounds protein research in the UniProt SPARQL endpoint, providing tools for querying proteins, sequences, variants, diseases, and more via intent-named tools and raw SPARQL.

Grounds gene-nomenclature work in the HUGO Gene Nomenclature Committee (HGNC) dataset, enabling resolution of gene symbols and IDs to canonical HGNC identifiers, plus cross-references and batch operations.

An MCP server implementing the ROBINS-I V2 framework for risk-of-bias assessment in non-randomized studies, with deterministic algorithms and full provenance. It enables users to parse study documents, specify target trial results, answer signalling questions with evidence-bound quotes, and compute or override domain judgements.

MyChart MCP Server

Verified ICD-10-CM code lookup & validation for AI agents — official descriptions, not guesses.

TransBench is a translational research agent that takes free-text clinical observations, decomposes them into biological axes, generates falsifiable hypotheses grounded in PubMed evidence, and designs reproducible computational experiments with concrete datasets for Claude Science.

MCP server that reads glucose data from a FreeStyle sensor via the LibreLinkUp API, providing current glucose and history with explicit coverage and gaps.

Monitors PubMed and medRxiv for configurable research topics, summarizes papers using a local LLM, and stores deduplicated results in a local database.

Enables natural language querying of brain volumes (NIfTI) with a fixed set of tools, returning visualizations and reproducible nilearn code.

Enables Claude Desktop to query and analyze diabetes data from Omnipod 5 and Glooko through natural language, providing clinical audit and triage insights such as time in range, trends, and bolus analysis.

SuperGlookoQuery is a Claude Desktop extension (MCPB) that connects to Glooko diabetes device data and exposes it as clinical analysis tools (time in range, GMI, trends, enriched bolus/basal analysis, charting), for any pump/CGM combination Glooko supports rather than one fixed device. It's a fork of Richard Hall's podquery-mcp, reworked to discover each account's own data shape rather than assumi

MCP server for automated ICD-10 medical coding. Code clinical text to ICD-10-CM diagnoses, search 74,000+ codes, and de-identify PHI via the AutoICD API.

An MCP server for longevity and metabolic medicine that provides a medication catalog, dosing protocols, contraindication screening, drug interaction checks, lab recommendations, and patient intake pathways across 35 compounds.

Enables validation of clinical notes in SOAP format, checking required fields and semantic coherence using a local LLM, all processed locally with no data leaving the machine.

Renders interactive 2D molecular structure diagrams from SMILES notation and computes molecular properties like molecular weight, LogP, and TPSA, directly in the chat.