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  • pubmed-mcp-server

    cyanheads
    A
    license
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    A bridge connecting AI agents to NCBI's PubMed database through the Model Context Protocol, enabling seamless searching, retrieval, and analysis of biomedical literature and data.
    Last updated
    10
    2,427
    121
    Apache 2.0
  • openpgx by open-pgx

    openpgxofficial

    open-pgx
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    quality
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    Enables AI-driven pharmacogenomic analysis by querying structured genetic variant, drug response, and disease risk data. Supports natural language questions about medications, traits, and health risks based on user genome data, with privacy-first local execution.
    Last updated
    16
    90
    10
    MIT

  • gnomAD MCP Server

    koido
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    license
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    quality
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    maintenance
    Provides a programmatic interface to the Genome Aggregation Database (gnomAD) API across versions v2.1.1, v3.1.2, and v4.1.0. It enables users to query gene metadata, variant information, population frequencies, and ClinVar data through a unified schema.
    Last updated
    12
    5
    Apache 2.0

  • cxg-census-mcp

    MaxMLang
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    license
    B
    quality
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    Enables LLM agents to query the CZ CELLxGENE Census single-cell atlas with ontology-aware filters, cost caps, and full provenance, allowing natural language questions about cell types, tissues, and gene expression.
    Last updated
    13
    MIT

  • gnomAD MCP Server

    shukwong
    F
    license
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    quality
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    maintenance
    Enables AI assistants to query genetic variant data, gene constraints, and population genetics information from the gnomAD (Genome Aggregation Database) through its GraphQL API. Supports searching for genes and variants, retrieving constraint scores, analyzing population frequencies, and accessing genomic coverage data.
    Last updated
    9
    10

  • cBioPortal MCP Server

    pickleton89
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    license
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    quality
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    A server that enables AI assistants to interact with cancer genomics data from cBioPortal, allowing users to explore cancer studies, access genomic data, and retrieve mutations and clinical information.
    Last updated
    17
    5
    MIT

  • SCMCP

    scmcphub
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    license
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    quality
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    An MCP server that enables scRNA-Seq analysis through natural language, providing tools for data preprocessing, clustering, and biological visualization. It supports both predefined function execution and a flexible code mode powered by a Jupyter backend for automated single-cell transcriptomics workflows.
    Last updated
    15
    BSD 3-Clause

  • UniProt MCP Server

    vitamin3615
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    quality
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    maintenance
    An MCP server that enables language models to fetch protein information from the UniProt database, including protein details, sequences, functions, and structures.
    Last updated
    MIT