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moiz-lakkadkutta

flyconn-mcp

by moiz-lakkadkutta
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flyconn-mcp

An MCP server that lets Claude, Cursor or any MCP client query public Drosophila connectomes and run in-silico experiments on them through flyconn. It runs locally. Every answer carries flyconn's controls, uncertainty and provenance.

Status: pre-alpha (M0 scaffold). Only list_datasets exists so far; see PLAN.md.

Install (from source, for now)

git clone https://github.com/moiz-lakkadkutta/flyconn-mcp && cd flyconn-mcp
uv sync
claude mcp add flyconn -- uv --directory "$PWD" run flyconn-mcp

Once released on PyPI: claude mcp add flyconn -- uvx flyconn-mcp.

Data lives in flyconn's cache ($FLYCONN_CACHE, default ~/.cache/flyconn). Pull a dataset with flyconn data pull malecns@1.0 --level weights (about 1.1 GB).

Related MCP server: ASTRA MCP Server

Tools

Tool

Does

list_datasets

Registered datasets with licence, citation, download size per level, and the locally cached level

Honesty

Wiring is measured; neurotransmitter signs are predicted; simulation outputs are model predictions. Experiments run with rewire / sign-shuffle controls on by default.

Development

scripts/check.sh runs ruff, format check, pyright (strict) and the offline tests.

Licence: Apache-2.0.

This server cannot be deployed

One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

Maintenance

ActivityMaintained
ResponsivenessNo issues

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