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viz.render_ppi_metabolic

Produces an interactive HTML rendering of viral-enzyme-reaction layers with ipTM tiers and metabolic flux overlay.

Instructions

Render the 3-layer viral->enzyme->reaction interactive HTML with ipTM tiers and flux overlay.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
out_pathNo
gpr_edgesNo
ppi_edgesYes
session_idNo
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, and the description does not disclose behavioral traits such as side effects, required permissions, or performance implications. It only states what is rendered without addressing how the tool behaves under various conditions.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, well-structured sentence that conveys the core purpose without extraneous words, making it highly efficient for an agent to parse.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness1/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's complexity (4 parameters, no output schema, no annotations), the description is severely incomplete. It omits parameter semantics, return values, and operational constraints, leaving the agent with insufficient information to invoke the tool correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters1/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description fails to explain any of the four parameters (ppi_edges, out_path, gpr_edges, session_id). Their roles and formats are entirely undocumented, forcing the agent to guess or rely on external knowledge.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description explicitly states the tool renders a '3-layer viral->enzyme->reaction interactive HTML' with 'ipTM tiers and flux overlay', providing a specific verb and resource. It differentiates from siblings like viz.render_metabolic_map and viz.render_subnetwork by its focus on PPI-metabolic integration.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description offers no guidance on when to use this tool versus alternatives. It does not mention prerequisites, limitations, or appropriate contexts for usage.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Install Server

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