literature.compile_constraints
Build metabolic simulation constraints from literature-derived claim triples, applying deterministic confidence scoring to source and target resolution.
Instructions
Compile literature.extract_claim's (source,target,sign) triples into the InteractionConstraint list metabolic.simulate/couple_and_test consume. Deterministic server-side policy (not agent judgement): prefer the literal target when it resolves into the model gene universe (role_used=target); else fall back to the source as a confidence-penalized proxy (role_used=source_proxy); else drop the claim (role_used counts + drop reasons returned). Each compiled constraint carries resolution_confidence so a fuzzy alias-tier resolution is visibly weaker evidence than an exact model-id hit.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| claims | Yes | ||
| session_id | Yes | ||
| min_confidence | No | ||
| default_scale_activating | No | ||
| default_scale_inhibiting | No | ||
| allowed_disease_specificity | No |