Skip to main content
Glama

regmap.subgraph_extract

Extract the signed regulatory subgraph around seed nodes to define a disease-map module.

Instructions

Extract the signed regulatory subgraph around seed nodes (representative disease-map module).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
max_hopsNo
seed_nodesYes
session_idYes
resolved_edgesNo
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description must disclose behavioral traits, but it only states the action without mentioning whether it is read-only, destructive, or any other side effects. Key details like graph size limits or permissions are omitted.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness3/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single concise sentence, but it lacks structure and front-loaded details for a 4-parameter tool. It is not overly verbose, but brevity compromises informativeness.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness1/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the complexity (4 params, 0% schema coverage, no output schema, no annotations), the description is severely incomplete. It fails to explain inputs, outputs, or usage context.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters1/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so the description must compensate, but it only references 'seed nodes' without defining format or constraints. Parameters like 'session_id', 'max_hops', and 'resolved_edges' are not explained at all.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'extract' and the resource 'signed regulatory subgraph' with specific context 'around seed nodes' and 'representative disease-map module', effectively distinguishing it from sibling tools like metabolic.neighbourhood_extract.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is provided on when to use this tool versus alternatives, nor are any prerequisites or exclusions mentioned. The agent must infer usage from the name alone.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Install Server

Other Tools

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/ali-kishk/FluxForge_MCP'

If you have feedback or need assistance with the MCP directory API, please join our Discord server