viz.render_metabolic_map
Visualize compiled metabolic constraints on an Escher curated map, with automatic fallback to cytoscape subnetwork when no curated map covers the model.
Instructions
DEFAULT metabolic visualizer: overlay compiled constraints on an Escher curated pathway map (biochemically-correct layout); automatically falls back to the cytoscape subnetwork renderer when no curated map covers the model. Returns {backend, out_path, n_reactions_on_map, map_used, fallback_reason}.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| model | Yes | ||
| title | No | Metabolic constraint map | |
| prefer | No | escher | |
| out_path | No | ||
| session_id | No | ||
| constraints | Yes |