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search_geo_samples

Search for individual GEO samples (GSM) by keyword. Retrieves matching sample records from the Gene Expression Omnibus database.

Instructions

Search GEO Samples (GSM) - individual samples

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
termYesSearch term for GEO Samples
retmaxNoMaximum number of results to return (default: 20)
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must fully convey behavioral traits. It only says 'Search' without disclosing results behavior, authentication needs, rate limits, or data completeness.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single short sentence, very concise and front-loaded. It contains no unnecessary words, though it could be slightly more informative without losing conciseness.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

While the tool is simple (2 params, no output schema), the description lacks details about return format, result limitations, or usage tips. Given the numerous siblings, more context would help an agent select correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Both parameters are fully described in the input schema (100% coverage), and the description adds no additional meaning beyond what the schema provides. Baseline 3 is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it searches GEO Samples (GSM) and specifies 'individual samples', which distinguishes it from siblings like search_geo_datasets or search_geo_series. The verb 'Search' combined with the resource 'GEO Samples' provides specific purpose.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is provided on when to use this tool versus the many sibling search tools (e.g., search_geo_datasets, search_geo_series). There is no mention of context or alternatives.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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