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search_geo_datasets

Search curated gene expression datasets from GEO using a search term. Returns a configurable maximum number of results.

Instructions

Search GEO Datasets (GDS) - curated gene expression datasets

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
termYesSearch term for GEO Datasets
retmaxNoMaximum number of results to return (default: 20)
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations exist, so the description must convey behavioral traits. It only states it performs a search, but does not disclose aspects like pagination behavior, result ordering, potential latency, or any side effects. For a search tool, the lack of transparency into result handling is a notable gap.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single sentence that is front-loaded with the action and resource. It is efficient and to the point, though it could include slightly more useful detail without becoming verbose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The tool has a simple, two-parameter input and no output schema. The description does not explain what the output contains (e.g., list of dataset summaries). For a tool with no output schema, the description should at least hint at the return format. The lack of completion leaves agents uncertain about the tool's behavior.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, so the schema already documents both parameters. The description adds no additional meaning beyond the schema. Baseline score of 3 is appropriate for this coverage level.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'Search' and the resource 'GEO Datasets (GDS)', and the parenthetical 'curated gene expression datasets' further specifies the content. It effectively distinguishes from sibling tools like search_geo_samples, search_geo_platforms, etc., each targeting different GEO sub-resources.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is provided on when to use this tool versus siblings. The description does not include any context about prerequisites, preferred scenarios, or exclusions. Given the multiple similar search tools, this omission impairs tool selection.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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