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download_geo_data

Download GEO data files (SOFT format) using a GEO accession ID. Select database type: GSE, GSM, GPL, or GDS.

Instructions

Download GEO data files (SOFT format)

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
geo_idYesGEO accession ID (e.g., GSE12345, GSM789, GPL456, GDS123)
db_typeNoDatabase type: gse, gsm, gpl, or gds (default: gse)gse
output_dirNoOptional custom output directory
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description bears full responsibility. It only mentions downloading SOFT format, but does not disclose side effects (e.g., overwriting files, network usage, or error handling). Essential behavioral traits like what happens if the output directory exists are omitted.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single sentence that is appropriately sized and front-loaded. It contains no unnecessary words, though it could benefit from slightly more detail without becoming verbose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the lack of output schema, the description should explain what the tool returns or achieves. It does not mention the result (e.g., file path, success message), leaving the agent uncertain about the tool's output. The description is incomplete for a tool with no structured output documentation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema covers all parameters with descriptions, so the description adds little beyond what is already known. The term 'SOFT format' provides some context, but does not significantly enhance parameter understanding.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Download GEO data files (SOFT format)', which specifies the verb and resource. It distinguishes itself from sibling tools like search and management tools, but lacks additional context such as the purpose of SOFT format.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives (e.g., when to choose different db_type or how the tool relates to search tools). The description does not mention prerequisites or typical usage scenarios.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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