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search_geo_profiles

Search the GEO Profiles database for gene expression profiles by entering a search term. Optionally limit the number of results returned.

Instructions

Search GEO Profiles database for gene expression profiles

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
termYesSearch term for GEO Profiles
retmaxNoMaximum number of results to return (default: 20)
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden of behavioral disclosure. It only states that the tool searches for profiles, but omits details such as pagination (though retmax is documented in schema), error handling, response format, or any side effects. The description adds minimal behavioral context beyond the basic purpose.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, efficient sentence that conveys the core purpose without extraneous words. It is appropriately front-loaded and fits within expected length for a simple search tool.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's complexity (2 parameters, no output schema, no annotations), the description is adequate but minimal. It does not clarify the scope of results, data source, or integration with other GEO tools. While sufficient for a straightforward search, more context would be beneficial for agent understanding.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100%, so the schema already documents both parameters. The description does not add any additional meaning or usage advice beyond what the schema provides. The baseline score of 3 is appropriate as the description neither adds nor detracts significantly from the parameter documentation.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'Search', the target resource 'GEO Profiles database', and the object 'gene expression profiles'. This specifically distinguishes it from sibling tools like search_geo_datasets, search_geo_platforms, etc., which target different GEO sub-databases.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is provided on when to use this tool versus alternatives like search_geo or search_geo_datasets. There is no mention of prerequisites, restrictions, or typical use cases, leaving the agent uninformed about selection criteria.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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