use crate::entities::pathway::{Pathway, PathwaySearchResult};
use crate::sources::reactome::{ReactomePathwayHit, ReactomePathwayRecord};
pub fn from_reactome_hit(hit: ReactomePathwayHit) -> PathwaySearchResult {
PathwaySearchResult {
id: hit.id,
name: hit.name,
}
}
pub fn from_reactome_record(record: ReactomePathwayRecord) -> Pathway {
Pathway {
id: record.id,
name: record.name,
species: record.species,
summary: record.summary,
genes: Vec::new(),
events: Vec::new(),
enrichment: Vec::new(),
}
}
#[cfg(test)]
mod tests {
use super::*;
#[test]
fn from_reactome_hit_maps_fields() {
let hit = ReactomePathwayHit {
id: "R-HSA-5673001".to_string(),
name: "RAF/MAP kinase cascade".to_string(),
};
let out = from_reactome_hit(hit);
assert_eq!(out.id, "R-HSA-5673001");
assert_eq!(out.name, "RAF/MAP kinase cascade");
}
#[test]
fn from_reactome_record_maps_fields() {
let record = ReactomePathwayRecord {
id: "R-HSA-5673001".to_string(),
name: "RAF/MAP kinase cascade".to_string(),
species: Some("Homo sapiens".to_string()),
summary: Some("Signal transduction pathway".to_string()),
};
let out = from_reactome_record(record);
assert_eq!(out.id, "R-HSA-5673001");
assert_eq!(out.name, "RAF/MAP kinase cascade");
assert_eq!(out.species.as_deref(), Some("Homo sapiens"));
assert_eq!(out.summary.as_deref(), Some("Signal transduction pathway"));
assert!(out.genes.is_empty());
assert!(out.events.is_empty());
assert!(out.enrichment.is_empty());
}
#[test]
fn from_reactome_record_handles_missing_summary() {
let record = ReactomePathwayRecord {
id: "R-HSA-6802957".to_string(),
name: "Signaling by BRAF and RAF fusions".to_string(),
species: Some("Homo sapiens".to_string()),
summary: None,
};
let out = from_reactome_record(record);
assert_eq!(out.summary, None);
assert!(out.events.is_empty());
}
#[test]
fn pathway_sections_maps_cell_cycle() {
let record = ReactomePathwayRecord {
id: "R-HSA-69278".to_string(),
name: "Cell Cycle, Mitotic".to_string(),
species: Some("Homo sapiens".to_string()),
summary: Some("Mitotic checkpoints and progression.".to_string()),
};
let out = from_reactome_record(record);
assert_eq!(out.id, "R-HSA-69278");
assert_eq!(out.name, "Cell Cycle, Mitotic");
assert_eq!(out.species.as_deref(), Some("Homo sapiens"));
}
}
