BioMCP

{% if section_only -%}
# {{ section_header }}
{% else -%}
# PGx: {% if gene %}{{ gene }}{% elif drug %}{{ drug }}{% else %}{{ query }}{% endif %}

{% if gene -%}
Gene: {{ gene }}
{% endif -%}
{% if drug -%}
Drug: {{ drug }}
{% endif -%}

{% if interactions -%}
{% if gene -%}
Affected Drugs: {% for row in interactions -%}{{ row.drugname }}{% if not loop.last %}, {% endif %}{% endfor %}
{% elif drug -%}
Affected Genes: {% for row in interactions -%}{{ row.genesymbol }}{% if not loop.last %}, {% endif %}{% endfor %}
{% endif -%}
{% endif -%}
{% endif -%}

{% if interactions -%}
| Drug | Gene | CPIC Level | PGx Testing |
|---|---|---|---|
{% for row in interactions -%}
| {{ row.drugname }} | {{ row.genesymbol }} | {{ row.cpiclevel or "-" }} | {{ row.pgxtesting or "-" }} |
{% endfor -%}
{% else -%}
No PGx interactions found.
{% endif -%}

{% if show_recommendations_section -%}
## Recommendations

{% if recommendations -%}
| Drug | Phenotype | Activity Score | Recommendation | Classification |
|---|---|---|---|---|
{% for row in recommendations -%}
| {{ row.drugname }} | {{ row.phenotype or "-" }} | {{ row.activity_score or "-" }} | {{ row.recommendation or "-" }} | {{ row.classification or "-" }} |
{% endfor -%}
{% else -%}
No CPIC recommendations found for this query.
{% endif -%}
{% endif -%}

{% if show_frequencies_section -%}
## Population Frequencies

{% if frequencies -%}
| Gene | Allele | Population | Frequency | Subjects |
|---|---|---|---|---|
{% for row in frequencies -%}
| {{ row.genesymbol }} | {{ row.allele }} | {{ row.population_group or "-" }} | {% if row.frequency is not none %}{{ row.frequency | af }}{% else %}-{% endif %} | {% if row.subject_count is not none %}{{ row.subject_count }}{% else %}-{% endif %} |
{% endfor -%}
{% else -%}
No CPIC population frequencies found for this query.
{% endif -%}
{% endif -%}

{% if show_guidelines_section -%}
## Guidelines

{% if guidelines -%}
| Guideline | Genes | Drugs |
|---|---|---|
{% for row in guidelines -%}
| {% if row.url %}[{{ row.name }}]({{ row.url }}){% else %}{{ row.name }}{% endif %} | {% if row.genes %}{{ row.genes | join(", ") }}{% else %}-{% endif %} | {% if row.drugs %}{{ row.drugs | join(", ") }}{% else %}-{% endif %} |
{% endfor -%}
{% else -%}
No CPIC guideline metadata found for this query.
{% endif -%}
{% endif -%}

{% if show_annotations_section -%}
## PharmGKB Annotations

{% if annotations -%}
| Source | Type | ID | Title | Level |
|---|---|---|---|---|
{% for row in annotations -%}
| {{ row.source }} | {{ row.kind }} | {{ row.id }} | {% if row.url %}[{{ row.title }}]({{ row.url }}){% else %}{{ row.title }}{% endif %} | {{ row.level or "-" }} |
{% endfor -%}
{% else -%}
No PharmGKB annotations found for this query.
{% endif -%}
{% if annotations_note -%}
{{ annotations_note }}
{% endif -%}
{% endif -%}

{% if sections -%}
Sections: {{ sections }}
{% endif -%}
{% if related -%}
Related: {{ related }}
{% endif -%}