# BioMCP Examples
This folder contains supporting paper-demo assets (`prompt.md`, `run.sh`, `score.sh`) for local experimentation.
## Canonical Workflows
For project 116, the canonical workflow interface is embedded skills, not this examples folder.
Use:
```bash
biomcp skill list
biomcp skill <number-or-slug>
```
## Mapping
| Example folder | Canonical skill |
|----------------|-----------------|
| `genegpt/` | `09-gene-function-lookup` |
| `geneagent/` | `10-gene-set-analysis` |
| `trialgpt/` | `03-trial-searching` (patient matching section) |
| `pubmed-beyond/` | `11-literature-synthesis` |
## When to Use This Folder
Use example scripts when you want a quick local benchmark harness with captured outputs/metrics. Use skills when you want the production workflow instructions agents should follow.
