BioMCP

repos: - repo: https://github.com/pre-commit/pre-commit-hooks rev: "v4.4.0" hooks: - id: check-case-conflict - id: check-merge-conflict - id: check-toml - id: check-yaml - id: end-of-file-fixer - id: trailing-whitespace - repo: https://github.com/astral-sh/ruff-pre-commit rev: "v0.6.3" hooks: - id: ruff args: [--exit-non-zero-on-fix] - id: ruff-format - repo: local hooks: - id: update-endpoints-doc name: Update THIRD_PARTY_ENDPOINTS.md entry: uv run python scripts/generate_endpoints_doc.py language: system pass_filenames: false files: 'src/biomcp/utils/endpoint_registry\.py$' - id: check-http-imports name: Check for direct HTTP library imports entry: uv run python scripts/check_http_imports.py language: system pass_filenames: false always_run: true files: '\.py$' - id: check-docs-in-mkdocs name: Check documentation files are in mkdocs.yml entry: uv run python scripts/check_docs_in_mkdocs.py language: system pass_filenames: false files: '^docs/.*\.md$|^mkdocs\.yml$' - repo: https://github.com/pre-commit/mirrors-prettier rev: "v3.0.3" hooks: - id: prettier