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ChEMBL MCP Server

substructure_search

Search for chemical compounds by specifying substructures using SMILES strings. Retrieve targeted results efficiently on the ChEMBL MCP Server.

Instructions

Find compounds containing specific substructures

Input Schema

NameRequiredDescriptionDefault
limitNoNumber of results to return (1-1000, default: 25)
smilesYesSMILES string of the substructure query

Input Schema (JSON Schema)

{ "properties": { "limit": { "description": "Number of results to return (1-1000, default: 25)", "maximum": 1000, "minimum": 1, "type": "number" }, "smiles": { "description": "SMILES string of the substructure query", "type": "string" } }, "required": [ "smiles" ], "type": "object" }

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/Augmented-Nature/ChEMBL-MCP-Server'

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