recommend_ontologies

Discover relevant biological ontologies for your text or keywords by customizing weights for coverage, acceptance, detail, and specialization criteria. Optimize results with tailored settings.

Instructions

Get ontology recommendations for text or keywords with customizable weights

Input Schema

Name	Required	Description
`input`	Yes	Input text or comma-separated keywords
`input_type`	No	Input type: 1=text, 2=keywords (default: 1)
`max_elements_set`	No	Max ontologies per set (2-4, default: 3)
`ontologies`	No	Comma-separated ontology acronyms to limit evaluation to
`output_type`	No	Output type: 1=individual ontologies, 2=ontology sets (default: 1)
`wa`	No	Weight for acceptance criterion (0-1, default: 0.15)
`wc`	No	Weight for coverage criterion (0-1, default: 0.55)
`wd`	No	Weight for detail criterion (0-1, default: 0.15)
`ws`	No	Weight for specialization criterion (0-1, default: 0.15)

Input Schema (JSON Schema)

{
  "properties": {
    "input": {
      "description": "Input text or comma-separated keywords",
      "type": "string"
    },
    "input_type": {
      "description": "Input type: 1=text, 2=keywords (default: 1)",
      "enum": [
        1,
        2
      ],
      "type": "number"
    },
    "max_elements_set": {
      "description": "Max ontologies per set (2-4, default: 3)",
      "enum": [
        2,
        3,
        4
      ],
      "type": "number"
    },
    "ontologies": {
      "description": "Comma-separated ontology acronyms to limit evaluation to",
      "type": "string"
    },
    "output_type": {
      "description": "Output type: 1=individual ontologies, 2=ontology sets (default: 1)",
      "enum": [
        1,
        2
      ],
      "type": "number"
    },
    "wa": {
      "description": "Weight for acceptance criterion (0-1, default: 0.15)",
      "maximum": 1,
      "minimum": 0,
      "type": "number"
    },
    "wc": {
      "description": "Weight for coverage criterion (0-1, default: 0.55)",
      "maximum": 1,
      "minimum": 0,
      "type": "number"
    },
    "wd": {
      "description": "Weight for detail criterion (0-1, default: 0.15)",
      "maximum": 1,
      "minimum": 0,
      "type": "number"
    },
    "ws": {
      "description": "Weight for specialization criterion (0-1, default: 0.15)",
      "maximum": 1,
      "minimum": 0,
      "type": "number"
    }
  },
  "required": [
    "input"
  ],
  "type": "object"
}

BioOntology MCP Server

recommend_ontologies

Instructions

Input Schema

Input Schema (JSON Schema)

Other Tools from BioOntology MCP Server

Related Tools

MCP directory API