search_properties

Locate ontology properties by labels, IDs, or types across biological ontologies. Filter results by exact matches, definitions, or specific attributes to streamline ontology exploration and data integration.

Instructions

Search ontology properties by their labels and IDs

Input Schema

Name	Required	Description
`also_search_views`	No	Include ontology views (default: false)
`include`	No	Attributes to include (default: label,labelGenerated,definition,parents)
`ontologies`	No	Comma-separated list of ontology acronyms
`ontology_types`	No	Ontology types to include (e.g., ONTOLOGY,VALUE_SET_COLLECTION)
`page`	No	Page number (default: 1)
`pagesize`	No	Results per page (default: 50, max: 500)
`property_types`	No	Property types (object,annotation,datatype)
`query`	Yes	Search query for properties
`require_definitions`	No	Only return properties with definitions (default: false)
`require_exact_match`	No	Require exact match (default: false)

Input Schema (JSON Schema)

{
  "properties": {
    "also_search_views": {
      "description": "Include ontology views (default: false)",
      "type": "boolean"
    },
    "include": {
      "description": "Attributes to include (default: label,labelGenerated,definition,parents)",
      "type": "string"
    },
    "ontologies": {
      "description": "Comma-separated list of ontology acronyms",
      "type": "string"
    },
    "ontology_types": {
      "description": "Ontology types to include (e.g., ONTOLOGY,VALUE_SET_COLLECTION)",
      "type": "string"
    },
    "page": {
      "description": "Page number (default: 1)",
      "minimum": 1,
      "type": "number"
    },
    "pagesize": {
      "description": "Results per page (default: 50, max: 500)",
      "maximum": 500,
      "minimum": 1,
      "type": "number"
    },
    "property_types": {
      "description": "Property types (object,annotation,datatype)",
      "type": "string"
    },
    "query": {
      "description": "Search query for properties",
      "type": "string"
    },
    "require_definitions": {
      "description": "Only return properties with definitions (default: false)",
      "type": "boolean"
    },
    "require_exact_match": {
      "description": "Require exact match (default: false)",
      "type": "boolean"
    }
  },
  "required": [
    "query"
  ],
  "type": "object"
}

BioOntology MCP Server

search_properties

Instructions

Input Schema

Input Schema (JSON Schema)

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