search_terms
Search and filter ontology terms across biological ontologies using customizable parameters like exact match, semantic types, and language preferences.
Instructions
Search across ontology terms with advanced filtering options
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| also_search_obsolete | No | Include obsolete terms (default: false) | |
| also_search_properties | No | Search in properties as well (default: false) | |
| also_search_views | No | Include ontology views in search (default: false) | |
| cui | No | Comma-separated CUIs to filter by | |
| include | No | Comma-separated attributes to include (e.g., prefLabel,synonym,definition) | |
| language | No | Language code (e.g., en, fr) | |
| ontologies | No | Comma-separated list of ontology acronyms to search in | |
| page | No | Page number (default: 1) | |
| pagesize | No | Results per page (default: 50, max: 500) | |
| query | Yes | Search query for ontology terms | |
| require_definitions | No | Only return terms with definitions (default: false) | |
| require_exact_match | No | Require exact match (default: false) | |
| semantic_types | No | Comma-separated semantic types to filter by | |
| suggest | No | Enable suggestion mode for type-ahead (default: false) |
Input Schema (JSON Schema)
{
"properties": {
"also_search_obsolete": {
"description": "Include obsolete terms (default: false)",
"type": "boolean"
},
"also_search_properties": {
"description": "Search in properties as well (default: false)",
"type": "boolean"
},
"also_search_views": {
"description": "Include ontology views in search (default: false)",
"type": "boolean"
},
"cui": {
"description": "Comma-separated CUIs to filter by",
"type": "string"
},
"include": {
"description": "Comma-separated attributes to include (e.g., prefLabel,synonym,definition)",
"type": "string"
},
"language": {
"description": "Language code (e.g., en, fr)",
"type": "string"
},
"ontologies": {
"description": "Comma-separated list of ontology acronyms to search in",
"type": "string"
},
"page": {
"description": "Page number (default: 1)",
"minimum": 1,
"type": "number"
},
"pagesize": {
"description": "Results per page (default: 50, max: 500)",
"maximum": 500,
"minimum": 1,
"type": "number"
},
"query": {
"description": "Search query for ontology terms",
"type": "string"
},
"require_definitions": {
"description": "Only return terms with definitions (default: false)",
"type": "boolean"
},
"require_exact_match": {
"description": "Require exact match (default: false)",
"type": "boolean"
},
"semantic_types": {
"description": "Comma-separated semantic types to filter by",
"type": "string"
},
"suggest": {
"description": "Enable suggestion mode for type-ahead (default: false)",
"type": "boolean"
}
},
"required": [
"query"
],
"type": "object"
}