Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
| BIOONTOLOGY_API_KEY | Yes | Your BioPortal API key generated from your account settings |
Schema
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| search_terms | Search across ontology terms with advanced filtering options |
| search_properties | Search ontology properties by their labels and IDs |
| search_ontologies | Search for ontologies by name, description, or domain |
| get_ontology_info | Get detailed information about a specific ontology |
| annotate_text | Analyze text and identify relevant ontology terms with configurable parameters |
| recommend_ontologies | Get ontology recommendations for text or keywords with customizable weights |
| batch_annotate | Process multiple texts for annotation efficiently |
| get_class_info | Get detailed information about a specific ontology class |
| get_ontology_metrics | Get usage statistics and quality metrics for an ontology |
| get_analytics_data | Get visitor statistics and popularity trends with optional date filtering |