Server Configuration
Describes the environment variables required to run the server.
Name | Required | Description | Default |
---|---|---|---|
BIOONTOLOGY_API_KEY | Yes | Your BioPortal API key generated from your account settings |
Schema
Prompts
Interactive templates invoked by user choice
Name | Description |
---|---|
No prompts |
Resources
Contextual data attached and managed by the client
Name | Description |
---|---|
No resources |
Tools
Functions exposed to the LLM to take actions
Name | Description |
---|---|
search_terms | Search across ontology terms with advanced filtering options |
search_properties | Search ontology properties by their labels and IDs |
search_ontologies | Search for ontologies by name, description, or domain |
get_ontology_info | Get detailed information about a specific ontology |
annotate_text | Analyze text and identify relevant ontology terms with configurable parameters |
recommend_ontologies | Get ontology recommendations for text or keywords with customizable weights |
batch_annotate | Process multiple texts for annotation efficiently |
get_class_info | Get detailed information about a specific ontology class |
get_ontology_metrics | Get usage statistics and quality metrics for an ontology |
get_analytics_data | Get visitor statistics and popularity trends with optional date filtering |