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Glama

BioOntology MCP Server

Server Configuration

Describes the environment variables required to run the server.

NameRequiredDescriptionDefault
BIOONTOLOGY_API_KEYYesYour BioPortal API key generated from your account settings

Schema

Prompts

Interactive templates invoked by user choice

NameDescription

No prompts

Resources

Contextual data attached and managed by the client

NameDescription

No resources

Tools

Functions exposed to the LLM to take actions

NameDescription
search_terms

Search across ontology terms with advanced filtering options

search_properties

Search ontology properties by their labels and IDs

search_ontologies

Search for ontologies by name, description, or domain

get_ontology_info

Get detailed information about a specific ontology

annotate_text

Analyze text and identify relevant ontology terms with configurable parameters

recommend_ontologies

Get ontology recommendations for text or keywords with customizable weights

batch_annotate

Process multiple texts for annotation efficiently

get_class_info

Get detailed information about a specific ontology class

get_ontology_metrics

Get usage statistics and quality metrics for an ontology

get_analytics_data

Get visitor statistics and popularity trends with optional date filtering

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/Augmented-Nature/BioOntology-MCP-Server'

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