GeneOntology MCP Server

MIT License

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search_go_terms

Search Gene Ontology terms by keyword, name, or definition to retrieve relevant results. Specify ontology type, result size, and match precision for tailored queries. Use this tool for gene annotation and functional enrichment studies.

Instructions

Search across Gene Ontology terms by keyword, name, or definition

Input Schema

Name	Required	Description
`exact`	No	Exact match only (default: false)
`include_obsolete`	No	Include obsolete terms (default: false)
`ontology`	No	GO ontology to search (default: all)
`query`	Yes	Search query (term name, keyword, or definition)
`size`	No	Number of results to return (1-500, default: 25)

Input Schema (JSON Schema)

{
  "properties": {
    "exact": {
      "description": "Exact match only (default: false)",
      "type": "boolean"
    },
    "include_obsolete": {
      "description": "Include obsolete terms (default: false)",
      "type": "boolean"
    },
    "ontology": {
      "description": "GO ontology to search (default: all)",
      "enum": [
        "molecular_function",
        "biological_process",
        "cellular_component",
        "all"
      ],
      "type": "string"
    },
    "query": {
      "description": "Search query (term name, keyword, or definition)",
      "type": "string"
    },
    "size": {
      "description": "Number of results to return (1-500, default: 25)",
      "maximum": 500,
      "minimum": 1,
      "type": "number"
    }
  },
  "required": [
    "query"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

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