GeneOntology MCP Server

MIT License

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search_go_terms

Search Gene Ontology terms by keyword, name, or definition to identify molecular functions, biological processes, or cellular components across datasets. Customize results with ontology filters, exact matches, and obsolete term inclusion.

Instructions

Search across Gene Ontology terms by keyword, name, or definition

Input Schema

Name	Required	Description
`exact`	No	Exact match only (default: false)
`include_obsolete`	No	Include obsolete terms (default: false)
`ontology`	No	GO ontology to search (default: all)
`query`	Yes	Search query (term name, keyword, or definition)
`size`	No	Number of results to return (1-500, default: 25)

Input Schema (JSON Schema)

{
  "properties": {
    "exact": {
      "description": "Exact match only (default: false)",
      "type": "boolean"
    },
    "include_obsolete": {
      "description": "Include obsolete terms (default: false)",
      "type": "boolean"
    },
    "ontology": {
      "description": "GO ontology to search (default: all)",
      "enum": [
        "molecular_function",
        "biological_process",
        "cellular_component",
        "all"
      ],
      "type": "string"
    },
    "query": {
      "description": "Search query (term name, keyword, or definition)",
      "type": "string"
    },
    "size": {
      "description": "Number of results to return (1-500, default: 25)",
      "maximum": 500,
      "minimum": 1,
      "type": "number"
    }
  },
  "required": [
    "query"
  ],
  "type": "object"
}

Install Server

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