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    Enables structured extraction of methods and reproducibility heuristics from academic papers, allowing AI agents to obtain metadata, full text, structured methods, code repository discovery, and a no-clone reproducibility verdict from a paper URL.
    8
    32 PyPI
    MIT
  • A
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    Not graded
    quality
    D
    maintenance
    Provides MCP tool adapters for Bioconductor methods like limma, DESeq2, and fgsea, enabling statistical analysis of omics data through containerized R execution. It serves as a bridge between MCP clients and bioinformatics tools for reproducible research workflows.
    Apache 2.0
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    Recommends study designs for a research question, states the identifying assumptions to verify, and returns runnable R, Python, or Julia code with a formatted citation for every source, drawn from methodological textbooks, an R package, and research articles on causal inference, econometrics, statistics, and machine learning.
    6
    MIT
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    Enables literature search, local Zotero reading, PDF parsing, citation tools, materials data, and scientific image generation for coding agents through a local Python MCP server.
    59 npm
    81 PyPI
    6
    MIT
  • F
    license
    A
    quality
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    maintenance
    An MCP-native pipeline for collecting structured intelligence on higher education institutions using the WHED schema, enabling scraping, extraction, validation, and saving of profiles.
    10
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  • A
    license
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    Give AI agents cited funding, money-market, FX and capital-market evidence through 16 public MCP tools. Keep source dates, freshness checks and coverage gaps attached; China macro coverage is metadata-only. No API key is required for the public surface. Research context only; no trade execution.
    2
    16
    1
    AGPL 3.0
  • A
    license
    A
    quality
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    maintenance
    Deterministic US equity-compensation tax optimizer. Six tools cover ISO/AMT exercise scheduling, NSO sell-vs-hold, RSU vest-and-sell, single-stock concentration, protective put / zero-cost collar pricing, and Section 1202 QSBS qualification. Federal plus 50-state plus DC tax math.
    8
    43 npm
    6
    MIT
  • A
    license
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    quality
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    maintenance
    Enables researchers to turn property-history questions into reviewable evidence dossiers by gathering sources, tracing people and places, linking conclusions to supporting or opposing passages, and exporting portable backups.
    37
    Apache 2.0
  • A
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    Not graded
    quality
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    maintenance
    MCP server for Jupyter notebook navigation and editing. Reads .ipynb files directly as JSON, providing efficient tools for reading, searching, and modifying cells without needing a Jupyter server.
    MIT
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    quality
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    maintenance
    Presents a plausible, tool-rich workspace surface — file reading, credential listing, command execution, database queries, and configuration retrieval — that returns only synthetic results while logging every connection, tool call, and argument received. It enables researchers to measure what MCP clients and agents actually do when handed dangerous-sounding tools, including whether they follow injected instructions or complete a retrieve-then-use credential chain.
    MIT
  • A
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    quality
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    maintenance
    Enables Codex to control a Gephi 3D network view through natural language, including network generation, 3D layout, node focus and neighbor highlighting, layered views, and PNG/PDF export.
    1
    MIT
  • A
    license
    Not graded
    quality
    B
    maintenance
    Enables users to describe a project in an MCP client and work through pre-submission grant phases, including finding fitting programs, checking eligibility and blockers, pulling precedent from past awards, shortlisting, and drafting memos, budgets, and submission checklists. Coverage is full for US grants and partial (discovery and precedent only) for Canada, with no win-odds estimates or post-award reporting.
    MIT
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    Not graded
    quality
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    maintenance
    Provides five rigorous reasoning protocols (debate, red team, audit_argument, threat_model, check_study) that run on the AI you're already using, requiring no extra API keys or costs.
    MIT
  • F
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    Not graded
    quality
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    maintenance
    Provides tools for AI-powered graph analysis, including relationship extraction, adjacency matrix creation, and network centrality calculations. It enables users to perform complex structural analysis and generate interactive D3.js visualizations from structured data.
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