"Papers With Code" matching MCP servers:

Monitors PubMed and medRxiv for configurable research topics, summarizes papers using a local LLM, and stores deduplicated results in a local database.

Enables searching and retrieving molecular hydrogen medical literature from H2 Papers database, with per-paper safety notes always included in results.

Explains why two scientific papers disagree. A contradiction explorer for bench scientists that compares two studies' designs and grounds every claim in a verbatim quote from the source text.

Verified ICD-10-CM code lookup & validation for AI agents — official descriptions, not guesses.

Enables natural language querying of brain volumes (NIfTI) with a fixed set of tools, returning visualizations and reproducible nilearn code.

Clinical research MCP server providing real-time access to PubMed (35M+ papers) and ClinicalTrials.gov (400K+ trials). Built for trial coordinators and life sciences teams. No API key required.

MCP server for automated ICD-10 medical coding. Code clinical text to ICD-10-CM diagnoses, search 74,000+ codes, and de-identify PHI via the AutoICD API.

Provides read-only tools for planning, writing, and auditing lesion network mapping and connectome-based localization papers, including design classification, methods checklists, phrasebooks, limitations, and manuscript auditing.

Enables developers to diagnose why FSE 2.0 CDA2 documents are rejected by validating locally, explaining schematron/XSD errors, looking up code systems, and generating synthetic sample documents.

Provides real-time Dexcom CGM glucose data to MCP clients via the unofficial Share API, enabling queries like current glucose and recent readings within the last 24 hours.

A Claude Code extension that embeds a senior athenahealth integration engineer in your development workflow, proactively catching data loss bugs and guiding safe DataView queries and API integrations.

Enables searching the public Dutch AGB-register for healthcare providers, practices and locations by AGB-code, name, zorgsoort, place or postcode, and retrieving full registrations with their kwalificaties, erkenningen and relations. Runs live against the register with no API key or account, and also looks up zorgsoort and kwalificatie codes offline.

Typed, validated FHIR tools for healthcare AI agents — build, read, validate, and code FHIR resources from a patient bundle, with terminology lookup and machine-readable validation reports built for fix-and-retry.

Connects to FHIR R4 servers and enables natural language search, read, and optional write of FHIR data from MCP clients like Claude Desktop/Code.

Enables LLM agents to search biomedical literature, retrieve article details, find related papers, manage caching, and download open-access full texts through MCP with structured, agent-friendly responses.

Provides seamless integration with FHIR APIs, enabling AI/LLM tools to search, retrieve, and analyze clinical healthcare data with support for SMART-on-FHIR authentication and multiple transport protocols.

Provides Claude Code with access to peer-reviewed medical information from MedlinePlus and StatPearls, and acts as an unlicensed diagnostic medical expert for educational purposes.

Offline MCP server for ICD medical code lookup, search, and crosswalk translation with 124K codes and 102K mappings, all local with zero network calls.

Enables coding assistants to check code for common health-data mistakes locally without an account, and, with a configured core service, de-identify clinical text, restore placeholders, and append tamper-evident audit log entries.

Pre-clinical drug discovery intelligence MCP server providing 44 tools to query 800+ drug targets, 12K+ compounds, 46K+ papers, 18K+ clinical trials, and 16K+ patents.