"How to use GitHub" matching MCP servers:

MyChart MCP Server

Enables AI assistants and local LLMs to interact with BirdNET-Go bioacoustic observatories, providing tools to query recent and historical bird detections, monitor station health, and retrieve audio clips.

A high-performance MCP server that gives LLMs access to 25 biomedical tools federated across 50+ upstream APIs for genes, variants, drugs, diseases, literature, clinical trials, and structural biology.

MCP server that locally de-identifies health documents, such as prescriptions, reports, images, and PDFs, before use with Codex or Claude Code. It runs OCR and identifier detection on-device and only returns de-identified text to the agent when the automated policy check results in PASS.

A learning MCP server providing synthetic FHIR patient data with read tools and a gated write workflow (propose → human approve → commit) with structured audit logging.

MCP server for connecting Claude Desktop to FHIRfly healthcare reference data APIs, enabling lookup of drugs, providers, clinical codes, and more.

Bridge any AI coding assistant directly to GenePattern — run bioinformatics modules, manage cloud jobs, and stream results, all through natural language.

Enables AI assistants to look up, search, validate, navigate hierarchies, and expand value sets for SNOMED CT clinical terminology through the Model Context Protocol.

MCP server for interacting with Galaxy bioinformatics platform, enabling AI assistants to connect to Galaxy instances, search and execute tools, manage workflows, and access other features.

Enables access to the IUPHAR/BPS Guide to PHARMACOLOGY database for querying drug targets, ligands, and pharmacological data without API keys.

Enables AI agents to control RELION 5.x cryo-EM structure determination software through natural language, providing 23 tools for the complete single-particle analysis pipeline.

Enables MCP clients like Claude Desktop to interact with openEHR REST APIs (EHRbase) for creating compositions, managing EHRs, listing templates, and executing AQL queries.

Sovereign MCP server for fallclinic-us, enabling AI agents to manage clinic workflows via Ed25519-signed, offline-capable tools. MIT-licensed and runs on your own infrastructure.

Provides access to BioThings.io APIs for comprehensive gene and variant annotations, enabling seamless integration of biological data into workflows.

MCP server for querying the GWAS Catalog (EBI/NHGRI), a curated catalog of genome-wide association studies. It enables AI agents to search and retrieve study data via natural language or direct tool calls.

Enables querying and browsing ontologies from the EBI Ontology Lookup Service, including searching for terms, retrieving term details, and navigating ontology hierarchies via natural language.

Access to 1000 Genomes Project dataset, hosted online in Dnaerys variant store

Enables AI agents to query the PomBase fission yeast model-organism database for genetic and molecular data through the Pipeworx MCP gateway.

MCP server for the Semble practice-management API, enabling AI agents to search for patients, contacts, and users, as well as retrieve patient relationships via read-only tools.

Enables read-only access to Chinese FHIR electronic health records, including patient summaries, medication review context, record queries, and attachment reading, along with controlled CSV import and status tools.