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GET /v1/servers – MCP directory API reference- AlicenseAqualityAmaintenanceEnables AI assistants and local LLMs to interact with BirdNET-Go bioacoustic observatories, providing tools to query recent and historical bird detections, monitor station health, and retrieve audio clips.188123MIT
- AlicenseAqualityAmaintenanceA high-performance MCP server that gives LLMs access to 25 biomedical tools federated across 50+ upstream APIs for genes, variants, drugs, diseases, literature, clinical trials, and structural biology.4177512Apache 2.0
- AlicenseAqualityAmaintenanceMCP server that locally de-identifies health documents, such as prescriptions, reports, images, and PDFs, before use with Codex or Claude Code. It runs OCR and identifier detection on-device and only returns de-identified text to the agent when the automated policy check results in PASS.6Apache 2.0

FHIRfly MCP Serverofficial
AlicenseNot gradedqualityBmaintenanceMCP server for connecting Claude Desktop to FHIRfly healthcare reference data APIs, enabling lookup of drugs, providers, clinical codes, and more.209MIT- AlicenseNot gradedqualityDmaintenanceBridge any AI coding assistant directly to GenePattern — run bioinformatics modules, manage cloud jobs, and stream results, all through natural language.2BSD 3-Clause

snowstorm-mcp-serverofficial
AlicenseNot gradedqualityCmaintenanceEnables AI assistants to look up, search, validate, navigate hierarchies, and expand value sets for SNOMED CT clinical terminology through the Model Context Protocol.8Apache 2.0
galaxy-mcpofficial
AlicenseNot gradedqualityBmaintenanceMCP server for interacting with Galaxy bioinformatics platform, enabling AI assistants to connect to Galaxy instances, search and execute tools, manage workflows, and access other features.38MIT- AlicenseNot gradedqualityCmaintenanceEnables access to the IUPHAR/BPS Guide to PHARMACOLOGY database for querying drug targets, ligands, and pharmacological data without API keys.6MIT
- AlicenseNot gradedqualityCmaintenanceEnables AI agents to control RELION 5.x cryo-EM structure determination software through natural language, providing 23 tools for the complete single-particle analysis pipeline.5MIT
- AlicenseNot gradedqualityDmaintenanceEnables MCP clients like Claude Desktop to interact with openEHR REST APIs (EHRbase) for creating compositions, managing EHRs, listing templates, and executing AQL queries.18MIT
- AlicenseNot gradedqualityCmaintenanceSovereign MCP server for fallclinic-us, enabling AI agents to manage clinic workflows via Ed25519-signed, offline-capable tools. MIT-licensed and runs on your own infrastructure.MIT
- AlicenseNot gradedqualityDmaintenanceProvides access to BioThings.io APIs for comprehensive gene and variant annotations, enabling seamless integration of biological data into workflows.8876MIT
- AlicenseNot gradedqualityCmaintenanceEnables searching FDA adverse-event reports for animal drugs, summarizing side effects by species, checking pet food and veterinary drug recalls, and finding nearby pet services from OpenStreetMap.1MIT
- AlicenseNot gradedqualityCmaintenanceMCP server for querying the GWAS Catalog (EBI/NHGRI), a curated catalog of genome-wide association studies. It enables AI agents to search and retrieve study data via natural language or direct tool calls.2MIT
- AlicenseNot gradedqualityCmaintenanceEnables querying and browsing ontologies from the EBI Ontology Lookup Service, including searching for terms, retrieving term details, and navigating ontology hierarchies via natural language.15MIT
- AlicenseNot gradedqualityCmaintenanceAccess to 1000 Genomes Project dataset, hosted online in Dnaerys variant store2Apache 2.0
- AlicenseNot gradedqualityCmaintenanceEnables AI agents to query the PomBase fission yeast model-organism database for genetic and molecular data through the Pipeworx MCP gateway.1MIT
- AlicenseNot gradedqualityBmaintenanceMCP server for the Semble practice-management API, enabling AI agents to search for patients, contacts, and users, as well as retrieve patient relationships via read-only tools.MIT
- AlicenseNot gradedqualityBmaintenanceEnables read-only access to Chinese FHIR electronic health records, including patient summaries, medication review context, record queries, and attachment reading, along with controlled CSV import and status tools.MIT