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"Interacting with AI models like OpenAI or Google models" matching MCP servers:

  • Omics AI MCP Server

    mfiume
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    Enables AI agents to conversationally interact with genomics research networks for data analysis and discovery across multiple Omics AI Explorer platforms. It provides tools for exploring data collections, examining table schemas, and executing SQL queries against datasets like Viral AI and Neuroscience AI.
    Last updated
    6
    1
    MIT

  • Biomart MCP

    jzinno
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    A Model Context Protocol server that interfaces with Biomart databases, allowing models to discover biological datasets, explore attributes/filters, retrieve biological data, and translate between different biological identifiers.
    Last updated
    8
    7
    MIT

  • mgi-link

    berntpopp
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    An MCP server that provides mouse genetics data from Mouse Genome Informatics (MGI), enabling LLM agents to query markers, mutations, alleles, phenotypes, and disease models.
    Last updated
    13
    1
    MIT
  • Noctua MCP Server by geneontology

    Noctua MCP Serverofficial

    geneontology
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    quality
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    Enables editing and querying of Gene Ontology Causal Activity Models (GO-CAMs) through the Barista API. Supports model creation, individual and fact management, evidence addition, and causal pathway construction for biological knowledge representation.
    Last updated
    18
    BSD 3-Clause

  • MCP Sequence Simulation Server

    coreymhudson
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    Enables the generation, mutation, and evolution of DNA and protein sequences using various evolutionary models and phylogenetic algorithms. It supports realistic next-generation sequencing read simulation and population-level evolutionary tracking for bioinformatics research and testing.
    Last updated
    6
    BSD 2-Clause "Simplified"

  • Wegene Assistant MCP Server

    xraywu
    F
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    quality
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    Leverages large language models to analyze users' WeGene genetic testing reports, providing access to report data via custom URI schemes and enabling profile and report management through OAuth authentication and API utilization.
    Last updated
    4
    4

  • fluxforge

    ali-kishk
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    license
    B
    quality
    B
    maintenance
    Predicts CRISPR gene dependencies and drug targets by integrating literature, regulatory/PPI networks, and genome-scale metabolic models.
    Last updated
    18
    Apache 2.0

  • BioMCP

    acashmoney
    F
    license
    B
    quality
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    maintenance
    A Model Context Protocol server that enhances language models with protein structure analysis capabilities, enabling detailed active site analysis and disease-related protein searches through established protein databases.
    Last updated
    2
    18
  • galaxy-mcp by galaxyproject

    galaxy-mcpofficial

    galaxyproject
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    quality
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    maintenance
    MCP server for interacting with Galaxy bioinformatics platform, enabling AI assistants to connect to Galaxy instances, search and execute tools, manage workflows, and access other features.
    Last updated
    36
    MIT

  • QML-MCP

    des137
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    quality
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    Enables quantum machine learning operations using Qiskit, including executing quantum circuits, computing quantum kernels, training variational quantum classifiers, and evaluating quantum ML models.
    Last updated
    MIT

  • UniProt MCP Server

    vitamin3615
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    quality
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    An MCP server that enables language models to fetch protein information from the UniProt database, including protein details, sequences, functions, and structures.
    Last updated
    MIT

  • heracleum-tox-mcp-server

    chemagents
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    quality
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    Reproduces the in-silico toxicological profile of Heracleum sosnowskyi metabolites from Rassabina & Fedorov (2025) using open-source models for LD50 prediction, toxicity classification, chemical space clustering, and synthesis cost estimation.
    Last updated
    MIT

  • gRNAde MCP Server

    MacromNex
    F
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    quality
    C
    maintenance
    Enables RNA structure analysis, sequence evaluation, and inverse design using geometric deep learning models. Supports both quick computational analysis and long-running batch processing for generating RNA sequences that fold into target structures.
    Last updated

  • bioRxiv-MCP-Server

    JackKuo666
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    quality
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    🔍 Enable AI assistants to search and access bioRxiv papers through a simple MCP interface. The bioRxiv MCP Server provides a bridge between AI assistants and bioRxiv's preprint repository through the Model Context Protocol (MCP). It allows AI models to search for biology preprints and access their
    Last updated
    24