A
licenseA
qualityC
maintenanceProvides an MCP interface to the ROBOT command-line tool for OWL ontology editing, enabling operations like merging, reasoning, and conversion via natural language.
Last updated
26
1
BSD 2-Clause "Simplified"
64,457 servers. Last updated
Search Relevance ↓
Recent Usage ↓
Date Added ↓
Date Updated ↓
Weekly Downloads ↓
GitHub Stars ↓
Recent GitHub Stars ↓
Matching MCP tools:
Matching MCP Connectors:
tech.blockheadlabs.chuck
ai.tooldirectory
com.cloudflare.ai.search.1fe7e288-6e9c-4e38-8cd7-29bfd1cc5210
run.mcpize.pubmed-search
"Database search and analysis tool" matching MCP servers:
- Flicense-qualityCmaintenanceEnables searching for academic papers and preprints across multiple platforms including Semantic Scholar, arXiv, PubMed, and CrossRef. It provides access to research records, DOI lookups, and journal metadata through a unified interface deployed on Cloudflare Workers.Last updated
- AlicenseBqualityDmaintenanceServer to search PubMed (PubMed is a free, online database that allows users to search for biomedical and life sciences literature). I have created on a day MCP came out but was on vacation, I saw someone post similar server in your DB, but figured to post mine.Last updated147MIT
- Flicense-qualityDmaintenanceEnables search and retrieval of academic papers from PubMed database with advanced features like MeSH term lookup, publication statistics, and PICO-based evidence search.Last updated5
- AlicenseAqualityAmaintenanceEnables AI agents and applications to search, retrieve, and analyze chemical compounds, substances, and bioassays from PubChem's vast chemical information database through comprehensive tools for chemical research and discovery.Last updated101,0209Apache 2.0
- AlicenseBqualityDmaintenanceProvides access to the STRING protein-protein interaction database for mapping identifiers, retrieving interaction networks, and performing functional enrichment analysis. It enables users to explore protein partners, pathways, and cross-species homology through natural language interactions.Last updated91ISC
- AlicenseBqualityDmaintenanceProvides seamless access to UniProtKB protein database, enabling queries for protein entries, sequences, Gene Ontology annotations, full-text search, and ID mapping across 200+ database types.Last updated52MIT
- AlicenseBqualityCmaintenanceProvides comprehensive BioPython capabilities for biological sequence analysis, alignment, database access (GenBank, UniProt, PubMed), protein structure analysis, and phylogenetics through a Model Context Protocol interface for AI-assisted bioinformatics workflows.Last updated322MIT
- FlicenseBqualityDmaintenanceA comprehensive Model Context Protocol (MCP) server for accessing the STRING protein interaction database. This server provides powerful tools for protein network analysis, functional enrichment, and comparative genomics through the STRING API.Last updated64
- AlicenseBqualityDmaintenanceEnables comprehensive access to PubChem's chemical database with over 110 million compounds. Supports chemical searches, structure analysis, bioactivity data, safety information, and molecular property calculations through 30 specialized tools.Last updated30MIT
RNAcentral MCP Serverofficial
Alicense-qualityCmaintenanceEnables complex searches, sequence mapping, genomic analysis, and metadata retrieval for non-coding RNA sequences from the RNAcentral database.Last updatedMIT- Alicense-qualityCmaintenanceEnables querying the gnomAD genome aggregation database for variant, gene, and region information.Last updated15MIT
- Alicense-qualityCmaintenanceEnables coding agents to interact with the Reactome pathway database, including search, lookup, hierarchy traversal, SBML/SBGN export, and gene-set enrichment analysis.Last updatedMIT
- Alicense-qualityAmaintenanceFederates 13 gene-related MCP backends (gnomAD, GTEx, etc.) behind a single Streamable HTTP endpoint with collision-free namespacing and search-based tool discovery.Last updated2MIT
- Alicense-qualityAmaintenanceA Model Context Protocol server providing programmatic access to 3D protein structural data from RCSB PDB, PDBe, and UniProt, enabling search, retrieval, comparison, and analysis of protein structures.Last updated2125Apache 2.0
- Alicense-qualityDmaintenanceValidates the physical and chemical plausibility of ligand–protein docking poses using the PoseBusters tool.Last updated5BSD 3-Clause
- Alicense-qualityCmaintenanceEnables querying metadata from MyVariant.info, a comprehensive variant annotation database, providing dataset statistics, source information, and build versions.Last updated7MIT
- Alicense-qualityDmaintenanceProvides MCP tool adapters for Bioconductor methods like limma, DESeq2, and fgsea, enabling statistical analysis of omics data through containerized R execution. It serves as a bridge between MCP clients and bioinformatics tools for reproducible research workflows.Last updatedApache 2.0
- Alicense-qualityDmaintenanceAn MCP server that enables language models to fetch protein information from the UniProt database, including protein details, sequences, functions, and structures.Last updatedMIT
- Alicense-qualityDmaintenanceProvides access to the ClinicalTrials.gov AACT database, enabling analysis of clinical trial data, tracking development trends, and generating therapeutic landscape insights.Last updated18MIT